Does the lh.orig surface exist for that subject?
Cameron Ellis wrote:
Hi,
Hopefully this is something simple. When I try to check the talairach
transform for my subjects I type:
tkregister2 --mgz --s SM1C2_autoreconall --fstal --surf orig
and then I get this error:
subject = SM1C2_autoreconall
Reading lh surface orig
MRISread(/space/troy/3/users/retrievalnewest/SM1C2_autoreconall/surf/lh.orig):
could not open file
No such file or directory
/usr/local/freesurfer/stable/bin/tkregister2.bin: could not read surface orig
No such file or directory
orig.mgz is in the mri folder. why is it looking for lh.orig? Without the
surf tag, tkregister loads the transform fine but I do not get the green
surface outlines to assist with the registration. A more detailed
transcription of the error is pasted below if needed.
Thanks,
Cameron
[troy:SM1C2_autoreconall] (nmr-std-env) cd ..
[troy:retrievalnewest] (nmr-std-env) pwd
/autofs/space/troy_003/users/retrievalnewest
[troy:retrievalnewest] (nmr-std-env) tkregister2 --mgz --s
SM1C2_autoreconall --fstal --surf orig
surfname set to orig
INFO: no target volume specified, assuming FreeSurfer orig volume.
target volume orig
movable volume (null)
reg file (null)
LoadVol 1
$Id: tkregister2.c,v 1.49.2.4 2006/03/27 21:48:16 greve Exp $
Diagnostic Level -1
%Mon Jan 8 14:55:02 2007>>> /usr/local/freesurfer/dev/mni/bin/minctracc
-clobber -debug /tmp/mritotal_2618/src_8_dxyz.mnc
/usr/local/freesurfer/dev/mni/bin/../share/mni_autoreg/average_305_8_dxyz.mnc
transforms/talairach.auto.xfm -transformation
/tmp/mritotal_2618/src_8tmp2c.xfm -lsq9 -xcorr -model_mask
/usr/local/freesurfer/dev/mni/bin/../share/mni_autoreg/average_305_8_mask.mnc
-center -2.114464 54.148323 -58.055290 -step 4 4 4 -tol 0.004 -simplex 2
talairach.xfm ---------------------
0.790 -0.163 0.022 8.207;
0.189 0.845 -0.535 -58.555;
0.093 0.573 0.939 13.334;
0.000 0.000 0.000 1.000;
INFO: loading target
/space/troy/3/users/retrievalnewest/SM1C2_autoreconall/mri/orig.mgz
INFO: changing target type to float
Ttarg: --------------------
-1.000 -0.000 0.000 125.117;
0.000 -0.000 1.000 -84.596;
-0.000 -1.000 0.000 84.914;
0.000 0.000 0.000 1.000;
INFO: loading movable /usr/local/freesurfer/stable/average/mni305.cor.mgz
INFO: changing move type to float
Tmov: --------------------
-1.000 0.000 0.000 128.000;
0.000 0.000 1.000 -128.000;
0.000 -1.000 0.000 128.000;
0.000 0.000 0.000 1.000;
mkheaderreg = 0, float2int = 0
---- Input registration matrix --------
0.790 -0.163 0.022 8.207;
0.189 0.845 -0.535 -58.555;
0.093 0.573 0.939 13.334;
0.000 0.000 0.000 1.000;
subject = SM1C2_autoreconall
Reading lh surface orig
MRISread(/space/troy/3/users/retrievalnewest/SM1C2_autoreconall/surf/lh.orig):
could not open file
No such file or directory
/usr/local/freesurfer/stable/bin/tkregister2.bin: could not read surface orig
No such file or directory
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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