Hi Darren,
did this just start for you? The 6th parm isn't used, but is reserved for
future stuff and should be in the file (it's in the current version)
Bruce
On Wed, 29 Nov 2006, Darren Weber wrote:
Why do we see the error below from CTABread? Is it important to have 6
parameters in FreeSurferColorLUT.txt?
Thanks, Darren
mri_segstats --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz
--ctab-default --excludeid 0 --brain-vol-from-seg --brainmask
mri/brainmask.mgz --in mri/norm.mgz --in-intensity-name norm
--in-intensity-units MR --etiv --subject ucsf_disc08
Using defalt ctab /home/dweber/freesurfer/home/FreeSurferColorLUT.txt
atlas_icv = 1.3356e+06
Loading mri/aseg.mgz
Loading mri/norm.mgz
Loading mri/norm.mgz
Loading mri/brainmask.mgz
# nbrainmaskvoxels 1453903
# brainmaskvolume 1453903.0
# nbrainsegvoxels 1047830
# brainsegvolume 1047830.0
Voxel Volume is 1 mm^3
Generating list of segmentation ids
CTABread(/home/dweber/freesurfer/home/FreeSurferColorLUT.txt): could not scan 6
parms from line 1100 ctx-lh-Unknown 0 0 0 (403)
CTABread(/home/dweber/freesurfer/home/FreeSurferColorLUT.txt): could not scan 6
parms from line 1101 ctx-lh-Corpus_callosum 50 50 50 (403)
....
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