In the same vein of mri_annotation2label:

When I ran

mri_annotation2label --subject subj25_bay2 --hemi rh --labelbase $SUBJECTS_DIR/subj25_bay2/label/aparc-rh --table $FREESURFER_HOME/Simple_surface_labels2005.txt

(where $SUBJECTS_DIR is ~dahlia/structurals/)

on mirabai in the nmr-std-env, 11 of 35 labels were created, and for the rest it said 'skipping' (e.g. the snippet below). How can I get all the labels to be created from the annotation file?

Thanks!
Dahlia.

  0      0   --- skipping
  1      0   --- skipping
  2      0   --- skipping
  3      0   --- skipping
  4      0   --- skipping
  5      0   --- skipping
6 2479 /homes/6/dahlia/structurals//subj25_bay2/label/aparc-rh-006.label LabelWrite: saving to /homes/6/dahlia/structurals//subj25_bay2/label/aparc-rh-006.label
  7      0   --- skipping
8 6499 /homes/6/dahlia/structurals//subj25_bay2/label/aparc-rh-008.label LabelWrite: saving to /homes/6/dahlia/structurals//subj25_bay2/label/aparc-rh-008.label
  9      0   --- skipping
 10      0   --- skipping


---------- Forwarded message ----------
Date: Thu, 26 Oct 2006 16:13:05 -0400 (EDT)
From: Dahlia Sharon <[EMAIL PROTECTED]>
To: freesurfer@nmr.mgh.harvard.edu
Subject: tables for mri_annotation2label

Hi,

When running mri_annotation2label, what is the correct table to give the --table option for ?h.aparc.annot ?

$FREESURFER_HOME/Simple_surface_labels2005.txt is the table for ?h.aparc.a2005s.annot, right?

Thanks!
Dahlia.
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