In the same vein of mri_annotation2label:
When I ran
mri_annotation2label --subject subj25_bay2 --hemi rh --labelbase
$SUBJECTS_DIR/subj25_bay2/label/aparc-rh --table
$FREESURFER_HOME/Simple_surface_labels2005.txt
(where $SUBJECTS_DIR is ~dahlia/structurals/)
on mirabai in the nmr-std-env, 11 of 35 labels were created, and for the
rest it said 'skipping' (e.g. the snippet below). How can I get all the
labels to be created from the annotation file?
Thanks!
Dahlia.
0 0 --- skipping
1 0 --- skipping
2 0 --- skipping
3 0 --- skipping
4 0 --- skipping
5 0 --- skipping
6 2479
/homes/6/dahlia/structurals//subj25_bay2/label/aparc-rh-006.label
LabelWrite: saving to
/homes/6/dahlia/structurals//subj25_bay2/label/aparc-rh-006.label
7 0 --- skipping
8 6499
/homes/6/dahlia/structurals//subj25_bay2/label/aparc-rh-008.label
LabelWrite: saving to
/homes/6/dahlia/structurals//subj25_bay2/label/aparc-rh-008.label
9 0 --- skipping
10 0 --- skipping
---------- Forwarded message ----------
Date: Thu, 26 Oct 2006 16:13:05 -0400 (EDT)
From: Dahlia Sharon <[EMAIL PROTECTED]>
To: freesurfer@nmr.mgh.harvard.edu
Subject: tables for mri_annotation2label
Hi,
When running mri_annotation2label, what is the correct table to give the
--table option for ?h.aparc.annot ?
$FREESURFER_HOME/Simple_surface_labels2005.txt is the table for
?h.aparc.a2005s.annot, right?
Thanks!
Dahlia.
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