Hi everyone, My goal is to have the cortical segmentation in subject's native space in analyze format volume images. the series of commands i run are:
mri_extract_label aparc+aseg.mgz LABELNUM outVolume.mgz mri_convert -rt nearest -rl rawavg.mgz outVolume.mgz outLabelSegmentation.img the problems I have are: 1- the segmentations I get are noisy 2- the segmentations are not as good as they look like in Surface segmentations and I can clearly see some holes and discontinuities at my final volumes. any suggestions? best, -- Behrang Nosrat Makouei, Engineering Science, MICA Lab (MIAL), TASC 9400, SFU. cell: 778-885-5016 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
