oh, I take it back, you shouldn't have to conform at that stage. What
does the orig.mgz look like? It is 0-255, and the thing you want to avoid
is saturation of the intensities. It tries to put the bulk of the histogram
in the mid intensity range.
On Thu, 12 Oct 2006, Derin Cobia wrote:
I seem to be having some difficulty in converting my flash images into FS
format for processing. After using mri_convert my orig.mgz files become
excessively bright compared to the original analyze file, thus creating
poor autorecon1 output, etc. See the attached jpgs of before and after
shots. Also, here's the command I'm using:
mri_convert -TI 20 -te 4 -tr 9.7 -flip_angle 0.174532925199433 -ot mgz
*subjectid*.img mri/orig/001.mgz
Am I doing something wrong? Thanks.
-Derin
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