Chacko, The error message 'mrisDefectAnalysis : defect xx overlap defect yy' appears when running v3.0.1 of freesurfer. That bug was fixed in v3.0.2. I suggest updating your version of freesurfer if possible.
Nick On Mon, 2006-08-14 at 11:46 -0700, Chacko Cherian wrote: > Hello all, > > One of the subjects I was running exited with ERRORS at the autorecon2 stage. > This is how it exited. > > INFO: assuming .mgz format > $Id: mris_fix_topology.c,v 1.41 2006/02/06 19:41:59 nicks Exp $ > $Id: mrisurf.c,v 1.441.2.1 2006/03/06 21:12:31 greve Exp $ > before topology correction, eno=-62 (nv=111893, nf=223972, ne=335927, g=32) > using quasi-homeomorphic spherical map to tessellate cortical surface... > > Correction of the Topology > Finding true center and radius of Spherical Surface...done > Surface centered at (0,0,0) with radius 100.0 in 8 iterations > marking ambiguous vertices... > 6825 ambiguous faces found in tessellation > segmenting defects... > defect 7 : 4 vertices have been added to the surface > defect 21 : 13 vertices have been added to the surface > defect 43 : 11 vertices have been added to the surface > defect 44 : 3 vertices have been added to the surface > defect 48 : 5 vertices have been added to the surface > defect 53 : 9 vertices have been added to the surface > total of 45 vertices has been added to the surface > analyzing defects... > mrisDefectAnalysis : defect 21 overlap defect 20 > reading input surface > /ud/chacko/freesurfer/subjects/AD_norm_cor25all111/maketemp/norm/subj21/surf/lh.qsphere.nofix... > reading brain volume from brain... > reading wm segmentation from wm... > Linux ernie 2.6.17.1 #4 PREEMPT Sat Aug 5 09:35:33 MST 2006 i686 pentium4 > i386 GNU/Linux > > > > I have also attached the recon-all.log file for reference. > Thanks in advance for your suggestions. > > Regards > > Chacko Cherian > Arizona State University. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
