Do you mean that you have an average subject that you want to use or
that you need to make one? The talairach brain is an average.
doug
On Wed, 7 Jun 2006, Paymon Hosseini wrote:
hi
i used the following commands to create a group subjects:
func2tal-sess -res 4 -analysis rk_enc2_sm5 -sf sessid -df sesspar
isxavg-fe-sess -analysis rk_enc2_sm5 -sf sessid -df sesspar -group
Y15ENC2_sm5_grp -space tal
stxgrinder-sess -analysis rk_enc2_sm5 -all -space tal -s Y15ENC2_sm5_grp
i use this command to view the results:
tkmedit-sess -analysis rk_enc2_sm5 -map sig -s Y15ENC2_sm5_grp -space tal
-isxavg fixed -c omnibus
the output is:
--------------------------------------------------------------
tkmedit-sess logfile is
/autofs/space/engram_012/users/pman/rk_fmri/code/log/tkmedit-sess.log
--------------------------------------------------------------
setenv SUBJECTS_DIR /space/engram/12/users/pman/rk_fmri/STRUCTS
INFO: Found session in: ./Y15ENC2_sm5_grp
INFO: Y15ENC2_sm5_grp is a group average
INFO: Found session in: ./Y15ENC2_sm5_grp
INFO: Y15ENC2_sm5_grp is a group average
INFO: subject is talairach
INFO: subject is talairach
INFO: Anatomical directory set to
/autofs/space/sake_003/users/inverse/anat_data/talairach/mri/orig
------------------------
SUBJECTS_DIR /space/engram/12/users/pman/rk_fmri/STRUCTS
/autofs/space/engram_012/users/pman/rk_fmri/code
tkmedit talairach orig -overlay
/autofs/space/engram_012/users/pman/rk_fmri/code/Y15ENC2_sm5_grp/bold/rk_enc2_sm5/tal-ffx/omnibus/fsig_000.bfloat
-overlay-reg
/autofs/space/engram_012/users/pman/rk_fmri/code/Y15ENC2_sm5_grp/bold/rk_enc2_sm5/tal-ffx/register.dat
-fthresh 2 -fmid 5 -fslope 1 -aux brain
------------------------
Reading 7 control points...
Reading /usr/local/freesurfer/stable/lib/tcl/tkm_common.tcl
Reading /usr/local/freesurfer/stable/lib/
the figure looks fine, but, i would like to be able to see the functional
maps on an average-subject hi-res structural map. can you please tell me how
to do this?
i am using "nmrenv" on engram.nmr.mgh.
thanks a lot,
paymon
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
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