Jorge, I can't say I've encountered this problem before, so I can only offer some basic suggestions. Which shell are you running from? bash, csh or tcsh?
Can you try creating a tcsh script that does a copy? like these two lines: #!/bin/tcsh cp somefile newsomefile where somefile is the name of some file of yours. This will at least start with the simplest thing. You can post your response to me if you want. Nick > Hello all > > I have a Dual core Intel Pentium 3.0Gz machine with > 2GB RAM and two SATA2 Hard Disks (300 GB and 80GB, > respectively). I have successfully installed Linux > Centos4 X86-64 (on the 80 GB disk) and the > corresponding freesurfer version. I have run several > freesurfer commands successfully (eg. tkmedit bert > orig.mgz). The problem is when I try to run a complete > analysis (recon-all - autorecon-all), the > corresponding terminal gets stop undefinedly when it > has to execute a copy operation (e.g. cp aseg.auto.mgz > aseg.mgz). That is to say the problem get rise when > freesurfer sends a copy order to the operating system. > > > Manually I carry out the copy command and I don't have > any problems. But when I reactivate freesurfer (eg. > recon-all - autorecon2-cp) the terminal stops again > when it has to carry out a copy operation again. > > I have another Intel Dual Xeon Dual Core 2.8Gz 5GB RAM > machine with Linux Centos 4 X86-64 and the same > configuration. No problem is there. > > Any tip to overcome this problem is welcome > > Thank you in advance > Jorge > > > > > ______________________________________________ > LLama Gratis a cualquier PC del Mundo. > Llamadas a fijos y móviles desde 1 céntimo por minuto. > http://es.voice.yahoo.com > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
