hmm, I'm not sure you can specify -a and -l. Not sure what it would mean.
Try taking the -a out. Does that file exist?
On Fri, 2 Jun 2006, adam
walczak wrote:
Hello,
I am trying to run mris_anatomical_stats using a label that I have created in
tksurfer, but I get a strange error when I run the command.
mris_anatomical_stats -mgz -a label/rh.aparc.annot -l label/rh_stg.label -b
wraw_KH_MAE3_4 rh inflated
INFO: assuming MGZ format for volumes.
computing statistics for each annotation in label/rh.aparc.annot.
limiting computations to label label/rh_stg.label.
reading volume
/cajal/public/programs/freesurfer/subjects/wraw_KH_MAE3_4/mri/wm.mgz...
zcat: /cajal/public/programs/freesurfer/subjects/wraw_KH_MAE3_4/mri/wm.mgz.gz:
No such file or directory
mghRead(/cajal/public/programs/freesurfer/subjects/wraw_KH_MAE3_4/mri/wm.mgz,
-1): read error
mris_anatomical_stats: could not read input volume
/cajal/public/programs/freesurfer/subjects/wraw_KH_MAE3_4/mri/wm.mgz
Did I do something wrong on the command? It works when I don't include the
label flag.
Thanks,
Adam
adam
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