You need to install afni. It used to be that we distributed afni with
freesurfer but we dont any more.
http://afni.nimh.nih.gov/afni
doug
Olivier Piguet wrote:
Good
morning,
I recently installed the new version of FreeSurfer and have been
re-familiarising myself with the steps/procedures. I followed the
FreeSurfer and FsFast tutorial which went fine until I tried the step
described in the FsFastTutorial/700: Motion correct the data. When I
ran the command:
mc-sess -sf sessid -df sesspar
I received the following error message:
Logfile is
/home/olivierp/BERT_TUTORIAL_ANALYSES/log/mc-bert-functional-bold.log
-------------------------------------------
/home/olivierp/FreeSurfer_tutorial/bert-functional
RunList: 007 008 009
Targ Stem is 007/f
------- ************************** -----------
------- Motion Correcting Run 007 -----------
------- ************************** -----------
sess = bert-functional
Fri May 26 08:27:34 EST 2006
mc-afni -i 007/f -o 007/fmc -t 007/f -toff 0 -ipr
3.12500000000000000000 -bpr 6. 00000007484366104649 -TR 2
ERROR: cannot find AFNI command to3d
Any help/suggestion on how to solve this problem would be greatly
appreciated.
Olivier Piguet
--
Olivier Piguet, Ph
Olivier
Piguet,
Ph.D.
Prince
of Wales
Medical Research Institute
Barker
St
Randwick
NSW 2031
Australia
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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