Anthony, See the references section at the bottom of the main wiki page, where most of the papers themselves can be downloaded:
https://surfer.nmr.mgh.harvard.edu/fswiki On Thu, 2006-05-18 at 17:02 -0400, Doug Greve wrote: > > btw, most of these are also listed at the end of: > > recon-all -help > > Bruce Fischl wrote: > > Be careful what you ask for :) > > > > -------------------------------------------------------------- > > if you use surface recons > > > > > > Dale, A.M. and M.I. Sereno (1993) Improved localization of cortical > > activity by combining EEG and MEG with MRI cortical surface > > reconstruction: > > A linear approach. Journal of Cognitive Neuroscience 5:162-176. > > > > Segonne F, Dale, AM, Busa E, Glessner M, Salvolini U, Hahn HK, > > Fischl B, A Hybrid Approach to the Skull-Stripping Problem in MRI. > > NeuroImage, 22, pp. 1160-1075, 2004 > > > > Dale, A.M., Fischl, Bruce, Sereno, M.I., (1999). Cortical Surface- > > Based > > Analysis I: Segmentation and Surface Reconstruction. NeuroImage > > 9(2):179-194 > > > > Fischl, Bruce, Sereno, M.I., Dale, A.M., (1999). Cortical Surface- > > Based > > Analysis II: Inflation, Flattening, and a Surface-Based Coordinate > > System. > > NeuroImage 9(2):195-207 > > > > Fischl, Bruce, Liu, Arthur, and Dale, A.M., (2001). Automated > > Manifold > > Surgery: Constructing Geometrically Accurate and Topologically > > Correct > > Models of the Human Cerebral Cortex. IEEE Transactions on Medical > > Imaging, > > 20(1):70-80 > > > > > > if you do inter-subject spherical averaging > > > > Fischl, Bruce, Sereno, M.I., Tootell, R.B.H., and Dale, A.M., > > (1999). > > High-resolution inter-subject averaging and a coordinate system for > > the > > cortical surface. Human Brain Mapping, 8:272-284 > > > > > > if you do a thickness study > > > > > > Fischl, Bruce, and Dale, A.M., (2000). Measuring the Thickness of > > the Human > > Cerebral Cortex from Magnetic Resonance Images. Proceedings of the > > National > > Academy of Sciences, 97:11044-11049. > > > > > > if you use cortical parcellations > > > > > > Fischl B, van der Kouwe A, Destrieux C, Halgren E, Ségonne F, > > Salat DH, Busa E, Seidman LJ, Goldstein J, Kennedy D, Caviness V, > > Makris > > N, Rosen B, Dale, AM Automatically Parcellating the Human Cerebral > > Cortex. Cerebral Cortex, 2004; 14:11-22. > > > > there should be another one here by Desikan and Killiany - I'll have > > to add it. > > > > if you do subcortical segmentation > > > > Fischl B, Salat DH, van der Kouwe AJW, Makris N, Ségonne F, Dale > > AM. Sequence-Independent Segmentation of Magnetic Resonance > > Images. > > NeuroImage 23 Suppl 1, S69-84. > > > > Fischl B, Salat D, Busa E, Albert M, Dieterich M, Haselgrove C, > > van der Kouwe A, Killiany R, Kennedy D, Klaveness S, Montillo A, > > Makris > > N, Rosen B, Dale A.M.. Whole brain segmentation. Automated labeling > > of > > neuroanatomical structures in the human brain. Neuron. 2002; 33(3): > > 341-355. > > > > > > > > misc other ones > > > > F. Segonne, E. Grimson and B. Fischl (2003). Topology Correction of > > Subcortical Segmentation", MICCAI 2003. > > > > > > Salat DH, Buckner RL, Snyder AZ, Greve DN, Desikan RSR, Busa E, > > Morris JC, Dale AM, Fischl B. Thinning of the cerebral cortex in > > aging. Cerebral Cortex. Accepted with revision. > > > > On Thu, 18 May 2006, anthony gallo wrote: > > > > > Surfers, > > > Can someone please point me towards some detailed description of > > > the > > > algorithms that freesurfer uses to process the data.......maybe > > > there are > > > some papers that talk about this?? > > > Anthony > > > > > > > ____________________________________________________________________ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > [EMAIL PROTECTED] > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > In order to help us help you, please follow the steps in: > surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
