I don't think we have anything that can do this easily, but it would not
be too hard to use matlab, eg,
m = MRIread('aseg.mgz');
m.vol = (m.vol == 18 | m.vol == 54); % 18 and 54 are for amygdala
MRIwrite(m,'amygdala.mgz');
Then in tkmedit, specify amygdala.mgz as the aux volume. Then
View->MaskFunctionalWithAux (or something like that) should do the trick.
doug
[EMAIL PROTECTED] wrote:
Hi -
I'm trying to make a picture for a manuscript submission. We'd like to
show group amygdala activation on a volume but we'd only like to show the
amygdala activation and mask all the other activation out of the picture.
How do we do this?
Thank you.
Trinity
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
