I have been having some basic problems with regard to paths. Freesurfer doesn't seem to want to write to directories that already exist. I was wondering if there is something different I need to do (I am running the reconstruction tutorial) to make this work.
-------- freesurfer-Linux-rh9-stable-pub-v3.0.1 --------
SUBJECTS_DIR is /cajal/public/programs/freesurfer/subjects
which: recon-all / autorecon1
pwd - /cajal/public/programs/freesurfer/subjects/13667/mri
command line - recon-all -i orig.mgz -autorecon1 -s 13667
--------error---------
INFO: SUBJECTS_DIR is /cajal/public/programs/freesurfer/subjects
ERROR: /cajal/public/programs/freesurfer/subjects/13667 exists
I am at a loss as to why this happens. Any help would be appreciated.
Adam Walczak
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