> but I would still like to know if there is anyway to build an mgz
> image of the grey volume segmented accordingly to ?h.aparc.annot. I
> hope you can help me.

In tksurfer, you can import an annotation as a segmentation file. This
will fill the voxels between surfaces with the label in the annotation
file. Then you can save this segmentation as a new volume.

-- 

Kevin Teich
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