recon-all -s maryam -finalsurfs
Reza Rajimehr wrote:
Hi,
I have recently reconstructed a brain using "recon-all -autorecon" in dev
environment. First I converted anatomicals to mgz format and then I ran
the following commands sequentially:
recon-all -subjid subject -autorecon1 -legacy
recon-all -subjid subject -autorecon2
The reconstruction has been done successfully without error. The inflated
surface is almost fine (without topological defects) but the "curv"
surfaces (curv.lh and curv.rh) do not look normal. They have only red
boundaries (sulci); the green boundaries (gyri) are absent. The sulc
surfaces look fine though.
on machine monkeylove
source /usr/local/freesurfer/nmr-dev-env
setenv SUBJECTS_DIR /space/ship/3/users/reza/mvp022106/3danat
which recon-all
/usr/local/freesurfer/dev/bin//recon-all
cd /space/ship/3/users/reza/mvp022106/MYSTUDY
Thanks for any comments,
Reza
********************************
Reza Rajimehr, MD
NMR Athinoula A. Martinos Center
Department of Radiology
Massachusetts General Hospital (MGH)
Building 149, 13th St.
Charlestown, MA 02129
Email: [EMAIL PROTECTED]
********************************
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
[EMAIL PROTECTED]
Phone Number: 617-724-2358
Fax: 617-726-7422
In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
