Dear all,
does someone out there run freesurfer
(freesurfer-Linux-rh9-dev20060210-full.tar.gz) under debian etch?
Installation runs smoothly, however, when I test the freesurfer
installation with
medpc32:~$ tksurfer bert rh pial
only a tiny fraction of Bert's brain is displayed. The GUI otherwise
seems to work as I can rotate etc this brain fraction.
I installed the same freesurfer version on a different computer running
debian "sarge", which is the current stable distribution. - Here, I can
see the whole brain!
As suggested elsewhere I thus compared the shared library dependencies
using
medpc32:~$ ldd `which tkmedit`
Here is what I got:
#########
"etch"-machine:
#########
medpc32:~$ ldd `which tkmedit`
linux-gate.so.1 => (0xffffe000)
libtix8.1.8.3.so =>
/local/opt/freesurfer_dev20060210/lib/tcltktixblt/lib/libtix8.1.8.3.so
(0xb7fb0000)
libtk8.4.so =>
/local/opt/freesurfer_dev20060210/lib/tcltktixblt/lib/libtk8.4.so
(0xb7ef0000)
libtcl8.4.so =>
/local/opt/freesurfer_dev20060210/lib/tcltktixblt/lib/libtcl8.4.so
(0xb7e57000)
libglut.so.3 => /usr/lib/libglut.so.3 (0xb7e0d000)
libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0xb7e04000)
libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0xb7dec000)
libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0xb7dd6000)
libXi.so.6 => /usr/X11R6/lib/libXi.so.6 (0xb7dce000)
libGLU.so.1 => /usr/lib/libGLU.so.1 (0xb7d4f000)
libGL.so.1 => /usr/lib/libGL.so.1 (0xb7ceb000)
libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0xb7c20000)
libgsl.so.0 =>
/local/opt/freesurfer_dev20060210/lib/gsl/lib/libgsl.so.0 (0xb7acc000)
libgslcblas.so.0 =>
/local/opt/freesurfer_dev20060210/lib/gsl/lib/libgslcblas.so.0 (0xb7a9c000)
libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0xb7a7c000)
libtiff.so.3 => /usr/lib/libtiff.so.3 (0xb7a2a000)
libz.so.1 => /usr/lib/libz.so.1 (0xb7a15000)
libm.so.6 => /lib/tls/libm.so.6 (0xb79ef000)
libcrypt.so.1 => /lib/tls/libcrypt.so.1 (0xb79c1000)
libc.so.6 => /lib/tls/libc.so.6 (0xb788a000)
libdl.so.2 => /lib/tls/libdl.so.2 (0xb7886000)
libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0xb7878000)
libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0xb7827000)
libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0xb774a000)
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0xb773f000)
libpthread.so.0 => /lib/tls/libpthread.so.0 (0xb772d000)
libXxf86vm.so.1 => /usr/X11R6/lib/libXxf86vm.so.1 (0xb7728000)
/lib/ld-linux.so.2 (0xb7feb000)
#########
"sarge" machine:
#########
kogneuro-web:~$ ldd `which tkmedit`
libtix8.1.8.3.so =>
/local/data/tools/freesurfer/lib/tcltktixblt/lib/libtix8.1.8.3.so
(0xb7fae000)
libtk8.4.so =>
/local/data/tools/freesurfer/lib/tcltktixblt/lib/libtk8.4.so (0xb7eee000)
libtcl8.4.so =>
/local/data/tools/freesurfer/lib/tcltktixblt/lib/libtcl8.4.so (0xb7e55000)
libglut.so.3 => /usr/lib/libglut.so.3 (0xb7e1b000)
libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0xb7e12000)
libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0xb7dfb000)
libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0xb7de4000)
libXi.so.6 => /usr/X11R6/lib/libXi.so.6 (0xb7ddc000)
libGLU.so.1 => /usr/lib/libGLU.so.1 (0xb7d61000)
libGL.so.1 => /usr/lib/libGL.so.1 (0xb7cf2000)
libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0xb7c2b000)
libgsl.so.0 =>
/local/data/tools/freesurfer/lib/gsl/lib/libgsl.so.0 (0xb7ad7000)
libgslcblas.so.0 =>
/local/data/tools/freesurfer/lib/gsl/lib/libgslcblas.so.0 (0xb7aa6000)
libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0xb7a88000)
libtiff.so.3 => /usr/lib/libtiff.so.3 (0xb7a38000)
libz.so.1 => /usr/lib/libz.so.1 (0xb7a26000)
libm.so.6 => /lib/tls/libm.so.6 (0xb7a04000)
libcrypt.so.1 => /lib/tls/libcrypt.so.1 (0xb79d7000)
libc.so.6 => /lib/tls/libc.so.6 (0xb78a1000)
libdl.so.2 => /lib/tls/libdl.so.2 (0xb789e000)
libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0xb7890000)
libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0xb783f000)
libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0xb7785000)
libgcc_s.so.1 => /lib/libgcc_s.so.1 (0xb7779000)
libpthread.so.0 => /lib/tls/libpthread.so.0 (0xb776a000)
/lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0xb7fea000)
The differences seem to be:
#########
"etch" machine:
#########
libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0xb774a000)
libXxf86vm.so.1 => /usr/X11R6/lib/libXxf86vm.so.1 (0xb7728000)
/lib/ld-linux.so.2 (0xb7feb000)
#########
"sarge" machine:
#########
libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0xb7785000)
/lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0xb7fea000)
Does this mean that the c++ libraries on my etch-running machine are
"too" new? Why is there no "=>" for /lib/ld-linux.so.2 on my
etch-running machine?
I would greatly appreciate any comments or ideas what else I could do.
Many thanks in advance,
Marcus
--
-------------------------------
Dr. Marcus Wilms
Cognitive Neurology Group
Institute of Medicine
Forschungszentrum Juelich
52425 Juelich, Germany
Phone: +49 (02461) 61-6184
E-Mail: [EMAIL PROTECTED]
Home: http://www.netwilms.net
----------------------------><>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
