check the aseg and see if it's reasonable. Something is badly wrong if
there are no lh and rh white matter points that are nbrs.
cheers,
Bruce
On Fri, 6 Jan
2006, Fornito, Alexander wrote:
Hi,
I've been getting the following error message when running autorecon2-wm with
some of my images.Any idea as to what might be causing this?
Thanks,
Alex
Fill Fri Jan 6 14:15:18 EST 2006
Using transforms/talairach.lta
mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta
-segmentation aseg.mgz wm.mgz filled.mgz
/data/flanders/work/alex/freesurfer/subjects_fe/1000795_fixwm/mri
logging cutting plane coordinates to ../scripts/ponscc.cut.log...
INFO: Using transforms/talairach.lta and its offset for Talairach volume ...
using segmentation aseg.mgz...
reading input volume...done.
searching for cutting planes...voxel to talairach voxel transform
1.120 0.025 -0.148 4.472;
0.007 1.256 0.182 -50.337;
0.160 -0.148 1.109 -29.027;
0.000 0.000 0.000 1.000;
voxel to talairach voxel transform
1.120 0.025 -0.148 4.472;
0.007 1.256 0.182 -50.337;
0.160 -0.148 1.109 -29.027;
0.000 0.000 0.000 1.000;
mri_fill: could not find any points where lh and rh wm are nbrs
INFO: Modifying dst c_(r,a,s), using the transform dst
INFO: Modifying dst c_(r,a,s), using the transform dst
reading segmented volume aseg.mgz...
INFO: Modifying dst c_(r,a,s), using the transform dst
ERROR: mri_fill exited with non-zero status
Linux flanders 2.4.26 #2 SMP Tue Dec 14 03:07:23 EST 2004 i686 GNU/Linux
recon-all exited with errors at Fri Jan 6 14:16:07 EST 2006
Alex Fornito
M.Psych/PhD (clin. neuro.) candidate
Melbourne Neuropsychiatry Centre and Department of Psychology
The University of Melbourne
[EMAIL PROTECTED]
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