That did the trick. Thanks! Alex Fornito M.Psych/PhD (clin. neuro.) candidate Melbourne Neuropsychiatry Centre and Department of Psychology The University of Melbourne [EMAIL PROTECTED]
-----Original Message----- From: [EMAIL PROTECTED] on behalf of Nick Schmansky Sent: Thu 15/12/2005 9:46 AM To: Fornito, Alexander Cc: Freesurfer Mailing List; Marin Richardson; Sasha Wolosin Subject: RE: [Freesurfer] autorecon2-wm Alex, The file is actually called 'recon-all', so try: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/recon-all After that is copied to your $FREESURFER_HOME/bin directory, be sure to make it executable: chmod a+x $FREESURFER_HOME/bin/recon-all Nick On Thu, 2005-12-15 at 09:24 +1100, Fornito, Alexander wrote: > Hi Doug, > I tried to download this but get a "No such file `recon-all-nmr'" message. > Cheers, > Alex > > Alex Fornito > M.Psych/PhD (clin. neuro.) candidate > Melbourne Neuropsychiatry Centre and Department of Psychology > The University of Melbourne > [EMAIL PROTECTED] > > > > -----Original Message----- > From: [EMAIL PROTECTED] on behalf of Doug Greve > Sent: Wed 14/12/2005 6:02 AM > To: Sasha Wolosin > Cc: freesurfer@nmr.mgh.harvard.edu; Marin Richardson > Subject: Re: [Freesurfer] autorecon2-wm > > > I only recently (ie, last weekish) added a flag to keep the edits when > wm is edited with aseg. You can get a new copy of recon all from: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/recon-all-nmr > > dogu > > Sasha Wolosin wrote: > > >Dear all, > > > > When we run autorecon2-wm it doesn't seem to be reading the editing > >done in the Edit WM With ASeg step. Looking at wm.mgz, none of the > >filling that we see after autorecon2 is present after autorecon2-wm. > >What's going wrong? > > > >Thanks, > >Marin > > > > > > > >Disclaimer: > >The materials in this e-mail are private and may contain Protected Health > >Information. Please note that e-mail is not necessarily confidential or > >secure. Your use of e-mail constitutes your acknowledgment of these > >confidentiality and security limitations. If you are not the intended > >recipient, be advised that any unauthorized use, disclosure, copying, > >distribution, or the taking of any action in reliance on the contents of > >this information is strictly prohibited. If you have received this e-mail in > >error, please immediately notify the sender via telephone or return e-mail. > >_______________________________________________ > >Freesurfer mailing list > >Freesurfer@nmr.mgh.harvard.edu > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
