Hi, I'm using a lot of control-points (typically 200-500) to compensate for intensity inhomogeneities in my images. This tends to create a rather uniformly looking white matter without any clearly discernible anatomical landmarks, such as the basal ganglia, etc. Does this mean that the subcortical segmentation won't work properly? Will this munificent use of control-points constitute a source of error for the cortical segmentation, or are the protocols relatively robust?

Thanks,
Martin Ystad
Medical Student
University of Bergen
Institute of Biomedicine
Jonas Lies vei 91, 5009
Bergen, Norway.
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