Hi Michele,
this is the way that the dev version currently works - the T1 gets
recreated in a 2nd pass that rerun the intensity normalization. We're going
to change this in the upcoming official release because it's too confusing.
Bruce
On Tue, 15 Nov 2005, Michele Perry wrote:
Hi,
I am having problems with the dev version of Freesurfer. I realized after
viewing the aseg that there was a skullstrip problem that I hadn't noticed
when I checked the brain volume between -autorecon1 and -autorecon2. When
I open brain.mgz and T1.mgz in tkmedit, they look identical (i.e. I can't
see skull in the T1). Any idea what went wrong?
Michele
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