Hi Sasha,
it gets written into the label dir by default. Are you sure that
directory exists (should be at the same level as surf)
Bruce
On Wed, 2 Nov 2005,
Sasha Wolosin wrote:
I'm having trouble specifying the output file when running
mris_ca_label- should it be in the surf folder or somewhere else?
(output below)
Thanks,
Sasha
[EMAIL PROTECTED] surf]$ pwd
/home/wolosin/subjects/dec1877J_prac/surf
[EMAIL PROTECTED] surf]$ mris_ca_label dec1877J_prac rh rh.sphere.reg
/freesurfer/ average/rh.atlas2002_simple.gcs rh.aparc.annot
reading atlas from /freesurfer/average/rh.atlas2002_simple.gcs...
reading color table from GCSA file....
input 1: CURVATURE FILE, flags 0, avgs 0, name sulc
input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature
labeling surface...
relabeling using gibbs priors...
000: 9230 changed, 125897 examined...
001: 2224 changed, 34779 examined...
002: 681 changed, 11344 examined...
003: 275 changed, 3817 examined...
004: 160 changed, 1602 examined...
005: 76 changed, 937 examined...
006: 31 changed, 434 examined...
007: 18 changed, 193 examined...
008: 15 changed, 103 examined...
009: 7 changed, 86 examined...
010: 2 changed, 46 examined...
011: 3 changed, 16 examined...
012: 0 changed, 10 examined...
000: 286 total segments, 189 labels (2604 vertices) changed
001: 107 total segments, 12 labels (195 vertices) changed
002: 95 total segments, 0 labels (0 vertices) changed
10 filter iterations complete (10 requested, 121 changed)
writing output to rh.aparc.annot...
could not write annot file
/home/wolosin/subjects/dec1877J_prac/surf/../label/rh .aparc.annot
No such file or directory
mris_ca_label: could not write annot file rh.aparc.annot for
dec1877J_prac
No such file or directory
[EMAIL PROTECTED] surf]$
Sasha Wolosin
Research Assistant
Developmental Cognitive Neurology
Kennedy Krieger Institute
707 N. Broadway
Baltimore, MD 21205
ph: (443) 923-9270
[EMAIL PROTECTED]
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