Hi,
I'm using version "freesurfer-Linux-centos4.0_x86_64-dev20050921-full".
After recon-all ... -autorecon1, the skull is stripped but a decent
portion of the meninges remain. I tried using
recon-all -skullstrip -wsthresh <h> -subjid <ID>
I ran that with h=20, h=10 and h=2. It didn't seem to help so I ran
recon-all ... -autorecon2
In the aseg, the meninges are labelled as cerebral cortex. There are also
places where non-cerebellar areas were labelled as cerebellum cortex.
Is there an automated way to fix either of these or should I fix it with
manual edits?
Michele
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