I ran recon-all stage1 and it took a very long time. Well, at least
longer than people document. I didn't time it, but it must have taken
close to 10 hours.
Also I received this error during mri_fill():
...
using +/- offset search region where offset is 39.....
using +/- offset search region where offset is 42.....
using +/- offset search region where offset is 45.....
using +/- offset search region where offset is 48.....
mri_fill: could not find pons
No such file or directory
INFO: Modifying dst c_(r,a,s), using the transform dst
INFO: Modifying dst c_(r,a,s), using the transform dst
INFO: Modifying dst c_(r,a,s), using the transform dst
talairach cc position changed to (0.90, -7.51, 23.75)
INFO: Modifying dst c_(r,a,s), using the transform dst
INFO: Modifying dst c_(r,a,s), using the transform dst
find_cutting_plane:seed point not in structure! Searching
neighborhood...
find_cutting_plane:seed point not in structure! Searching
neighborhood...
ERROR: mri_fill exited with non-zero status
recon-all exited with errors at Sat Jul 16 01:13:52 EDT 2005
Are there any suggestions? I am using a single T1 (1x1x1) image
acquired from a Siemens 1.5T machine. I realize I should use multiple
images for averaging, however I am just trying to get a feel for the
software.
-T
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
