Hi Akram,
try setting some control points in the white matter where there are
intensity variation. That may fix your cerebellum problem.
cheers,
Bruce
On Tue, 12
Jul 2005, Bakkour, Akram wrote:
Dear all,
I am working on a recent MPRAGE image obtained at MGH.
First, we had trouble converting the files, but Dr. Ress converted it to
analyze manually, I then used that analyze file in freesurfer.
The image has a lot of inhomogeneity and the intensity is variable from the
back and front of the brain and also between hemispheres.
wmfill includes the cerebellum as RH even if I set the coordinates for the
cutting planes in expert preferences.
Any suggestions as to what I should try next?
Thanks for the help!
Regards,
Akram.
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