when i source: Setting up environment for FreeSurfer/FS-FAST FREESURFER_HOME /usr/local/freesurfer/dev FSFAST_HOME /usr/local/freesurfer/dev/fsfast SUBJECTS_DIR /space/sake/3/users/inverse/subjects FUNCTIONALS_DIR /usr/local/freesurfer/dev/sessions MINC_BIN_DIR /usr/pubsw/packages/mni/current/bin MINC_LIB_DIR /usr/pubsw/packages/mni/current/lib FSL_DIR /usr/pubsw/packages/fsl/current QTDIR /usr/lib/qt3-gcc2.96
setenv SUBJECTS_DIR /space/orsay/2/knutsen and then run: recon-all-nmr -subjid ben -stage4b i get this error: [whatever:knutsen] (nmr-dev-env) recon-all-nmr -subjid jerry -stage4b INFO: SUBJECTS_DIR is /autofs/space/orsay_002/knutsen ######################################## program versions used $Id: recon-all-nmr,v 1.68 2005/07/07 04:59:34 greve Exp $ $Id: mri_motion_correct2,v 1.9 2004/12/14 03:37:42 greve Exp $ mri_convert --version $ $Header: /software/source/minc/cvsroot/minc/progs/rawtominc/rawtominc.c,v 6.3 1999/10/19 14:45:31 neelin Exp $ minctracc.c $Header: /software/source/registration/mni_autoreg/minctracc/Main/minctracc.c,v 96.3 2000/03/15 08:42:41 stever Exp $ $Header: /software/source/minc/cvsroot/minc/progs/mincresample/mincresample.c,v 6.2 1999/10/19 14:45:27 neelin Exp $ $Header: /software/source/minc/cvsroot/minc/progs/mincaverage/mincaverage.c,v 6.1 1999/10/19 14:45:18 neelin Exp $ $Id: talairach2,v 1.7 2004/08/31 18:07:37 tosa Exp $ mri_convert --version $ # $Id: mritotal.in,v 1.10 2000/06/14 12:55:01 louis Exp $ # $Id: nu_estimate.in,v 1.15 1999/08/10 18:05:42 jgsled Exp $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ $ ####################################### ERROR: cannot determine format of input When Leeland runs the same thing from his computer, it runs fine. What is wrong with my setup that I cannot run this? Thanks, Tamara _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
