you need to specify the correct direction cosines in mri_convert. The problem is that telling left from right posthoc is pretty much impossible unless you've used something like vitamin E tablets in the scan. This is why we don't use analyze, unless it comes with an spm-style .mat file (which does specify the direction cosines)
Bruce On Tue, 12 Apr 2005, Wan Park wrote: > Hello, after parcellating some brains, I have noticed that the program > "get confused" and label the occipital as frontal and viceversa. > > I started with img/hdr images. I suspect that this occurs because of a > "wrong" direction of the original image before doing mri_convert. Is it > true? > > How can I solve this? > > Thanks, > > Wan > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
