Can you send me command-lines and pointers to your data?
George Papadimitriou wrote: > > Hi Doug, > > Thanks a lot, this almost worked! I have one more issue. > > The template volume is an axial volume. It was loaded in tkmedit, and the > ROI was drawn on its coronal view, and then saved as a label file. > > After running mri_label2vol the resulting ANALYZE file displays the ROI > incorrectly. What we drew on the coronal view, shows up in the axial, > etc. > > How can we correct this? (w/ --reg flag?) > > Thanks a lot! > George P. > > On Wed, 2 Mar 2005, Doug Greve wrote: > > > > > Hi George, > > > > use mri_label2vol. Run with --help to get docs. You'll need to run it > > something like: > > > > mri_label2vol > > --label lh-avg_central_sulcus.label > > --temp f.img > > --o lh-avg_central_sulcus.img > > > > --temp is the template volume. The output volume > > (lh-avg_central_sulcus.img) will have the same geometry as the template. > > > > doug > > > > > > > > > > George Papadimitriou wrote: > >> > >> Hi guys, > >> > >> I need to convert a label file into analyze, and see if I can import it to > >> the Syngo as an ROI. How can I do this? > >> > >> I recall reading in an FS-FAST manual about a label2roi program. I don't > >> see it in the standard nmr environment. > >> > >> I'd really appreciate your input. > >> > >> George P. > >> > >> On Wed, 2 Mar 2005, Ruopeng Wang wrote: > >> > >>> > >>> Hi George, > >>> > >>> I have no idea what tkmedit's label file is. I never used tkmedit for > >>> real. But I remember some time ago, someone, maybe Judith, converted one > >>> to Analyze format, with help from one of tkmedit's developers (maybe > >>> Doug). > >>> > >>> Ruopeng > >>> > >>> On Wed, 2 Mar 2005, George Papadimitriou wrote: > >>> > >>>> Hi Ruopeng, > >>>> > >>>> Are you familiar with tkmedit's label files? They are used to select an > >>>> ROI. I would like to convert them into ANALYZE and import them into the > >>>> Syngo. Have you done this before? What are your suggestions? > >>>> > >>>> Thanks, > >>>> George P. > >>>> > >>> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > [EMAIL PROTECTED] > > Phone Number: 617-724-2358 > > Fax: 617-726-7422 > > -- Douglas N. Greve, Ph.D. MGH-NMR Center [EMAIL PROTECTED] Phone Number: 617-724-2358 Fax: 617-726-7422 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
