Are the MNI tools in your path?
Harshad Shanbhag wrote: > > Hi all, > > I am trying to use FreeSurfer to overlay FSL data. > > On running the command > $ recon-all -stage1 -subjid TEST > > I get the following error, > > Nu Intensity Correction Tue Mar 1 14:54:08 EST 2005 > mri_convert orig nu/nu0.mnc > mri_convert orig nu/nu0.mnc > reading from orig... > TR=1.00, TE=0.00, TI=0.00, flip angle=0.00 > i_ras = (-1, 0, 0) > j_ras = (0, 0, -1) > k_ras = (0, 1, 0) > writing to nu/nu0.mnc... > nu_correct -clobber nu/nu0.mnc nu/nu1.mnc > nu_correct: Command not found. > ERROR: nu_correct > > I do have MNI Tools installed, in the freesurfer folder. > > Please let me know what I should do. > > Thank you. > Harshad. > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [EMAIL PROTECTED] Phone Number: 617-724-2358 Fax: 617-726-7422 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
