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Hi, I'm trying to adjust the watershed thresholds on a few images, and have a question about the default watershed value.
When I run the skullstrip without specifying a watershed value, the recon-all.log file typically says:
preflooding height equal to 25 percent Sorting... T1-weighted MRI image modification of the preflooding height to 15 percent
I'm guessing this means the program first tried a value of 25%, somehow determined it was too high, and then used a watershed threshold of 15% instead. Is this correct?
Thanks,
-Aaron-
Aaron L. Goldman Post-Bacc IRTA Genes, Cognition and Psychosis Program, NIMH Building 10, Room 3C108 Phone: (301) 435-0944 Email: [EMAIL PROTECTED]
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