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Dear all- Today I tried mkbrainmask-sess (first time), and got
the error message shown below: +++++++++++++++++++++++++++++++++ ------------------------------------------------ ------------------------------------------------ /nfs/home/jliu/VM/S001 Mon Sep 20 21:20:40 CST 2004 -------------------------------------------------- /nfs/home/jliu/VM/S001/bold mkbrainmask -i 004/fmcss -o masks/brain -thresh 0.1
-umask 2 -------------------------------------------------- Scratch Dir is /tmp/mkbrainmask_23685 # ---------- Converting bvolume to .img
------------------ # mri_convert 004/fmcss_000.bshort
/tmp/mkbrainmask_23685/fmcss.img reading from 004/fmcss_000.bshort... INFO: bvolumeRead: min = 25, max = 1325 TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, -0.995227, 0.0975827) k_ras = (-0, 0.097583, 0.995227) writing to /tmp/mkbrainmask_23685/fmcss.img... Analyze Output Matrix -1.406 0.000 -0.000
94.016; 0.000 -1.400 0.195
101.727; 0.000 0.137 1.990
-42.636; 0.000 0.000
0.000 1.000; -------------------- INFO: set hdr.hist.orient to 3 # ---------- Using FSL's BET to Extract
Brain------------------ # This program has not been compiled for this data type /nfs/home/jliu/VM/S001/bold bet /tmp/mkbrainmask_23685/fmcss
/tmp/mkbrainmask_23685/brain -m -f 0.1 ERROR: bet failed ERROR: mkbrainmask failed Exit 1 +++++++++++++++++++++++++++++end+++++++++++++++++++++++++ The input data (fmcss) were motion-corrected,
spatial-smoothed, and intensity-normalized using fsfast (the newest version
released). Could anyone tell me how to fix this problem? Thanks for your help! jia |
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