On 6/14/14 10:24 PM, Irjohn Junus wrote: > Here's my /usr/local/lib/compat/pkg: > [ijunus@mars /]$ ls /usr/local/lib/compat/pkg > libXau.so.0libgd.so.4libxcb-sync.so.0 > libaprutil-1.so.3libpcre.so.1libxcb-xkb.so.0 > libatalk.so.3libpcre16.so.0libxcb.so.2 > libffi.so.5libpixman-1.so.30lxml-3.1.0-py2.7.egg-info > libfreetype.so.9libsvn_ra_neon-1.so.0 > libgcrypt.so.18libxcb-randr.so.1
Irjohn, None of that looks suspicious to me. I'm sorry to leave you hanging like this, but I'm at a loss for how to proceed. If you have any updates, like things you've tried or---even better---that the problem cleared up on its own, please let us know. In the mean time, perhaps somebody else will have some insight into what's going on. -John > On Wed, May 28, 2014 at 7:58 PM, John W. O'Brien <j...@saltant.com > <mailto:j...@saltant.com>> wrote: > > On 5/18/14 12:30 AM, Irjohn Junus wrote: > > Thank you for looking at this. Apologies for my late reply it's been > > crazy busy at work lately. > > I completely understand. As you can probably tell, my situation is > similar. > > > Here's answers to your questions: > > >> 1. What is the rpath stored in your copy of those numpy files? > >> That is, what is the output from > >> > >> cd /usr/local/lib/python2.7/site-packages/numpy/linalg > >> readelf -d _umath_linalg.so | grep RPATH > >> readelf -d lapack_lite.so | grep RPATH > >> > >> ? > > > readelf -d _umath_linalg.so | grep RPATH > > 0x000000000000000f (RPATH) Library rpath: > > [/usr/local/lib/gcc47] > > readelf -d lapack_lite.so | grep RPATH > > 0x000000000000000f (RPATH) Library rpath: > > [/usr/local/lib/gcc47] > > That looks correct to me. > > >> 2. What is the contents of > >> > /usr/local/lib/python2.7/site-packages/numpy/distutils/site.cfg on your > >> machine? > > > cat /usr/local/lib/python2.7/site-packages/numpy/distutils/site.cfg > > [DEFAULT] > > lapack_type=atlas > > library_dirs = > > > > /usr/lib:/usr/local/lib:/usr/local/lib/gcc47/gcc/x86_64-portbld-freebsd9.1/4.7.3/../../../ > > include_dirs = > > /usr/include:/usr/local/include:/usr/local/include/suitesparse > > src_dirs = /usr/local/src > > # search static libraries (.a) in preference to shared ones (.so) > > search_static_first = 0 > > [atlas] > > library_dirs = > > > > /usr/local/lib:/usr/local/lib/gcc47/gcc/x86_64-portbld-freebsd9.1/4.7.3/../../../ > > atlas_libs = lapack, blas > > Just like mine. > > >> 2. What is the contents of /etc/make.conf on your machine? > > > cat /etc/make.conf > > # added by use.perl 2013-03-25 18:12:09 > > PERL_VERSION=5.12.4 > > #WITH_MPM=worker > > Totally innocuous. > > >> 4. How to you install and upgrade your ports? Build from source > >> by hand? Build from source with the help of portmaster, > >> poudriere, etc? > >> Install binary packages with pkg_* or ports-mgmt/pkg (pkgng)? > > > 4. > > I use portmaster exclusively, to install: > > portmaster --packages-build --delete-build-only port-name > > to upgrade: > > portmaster --dwv port-name > > I'm taking a stab in the dark here. Based on the '-w' option, might > there be any stale libs hanging around in /usr/local/lib/compat/pkg? > > I haven't been able to reproduce this, so I'm not sure which tree to > bark up next.
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