On 5/18/14 12:30 AM, Irjohn Junus wrote: > Thank you for looking at this. Apologies for my late reply it's been > crazy busy at work lately.
I completely understand. As you can probably tell, my situation is similar. > Here's answers to your questions: >> 1. What is the rpath stored in your copy of those numpy files? >> That is, what is the output from >> >> cd /usr/local/lib/python2.7/site-packages/numpy/linalg >> readelf -d _umath_linalg.so | grep RPATH >> readelf -d lapack_lite.so | grep RPATH >> >> ? > readelf -d _umath_linalg.so | grep RPATH > 0x000000000000000f (RPATH) Library rpath: > [/usr/local/lib/gcc47] > readelf -d lapack_lite.so | grep RPATH > 0x000000000000000f (RPATH) Library rpath: > [/usr/local/lib/gcc47] That looks correct to me. >> 2. What is the contents of >> /usr/local/lib/python2.7/site-packages/numpy/distutils/site.cfg on your >> machine? > cat /usr/local/lib/python2.7/site-packages/numpy/distutils/site.cfg > [DEFAULT] > lapack_type=atlas > library_dirs = > /usr/lib:/usr/local/lib:/usr/local/lib/gcc47/gcc/x86_64-portbld-freebsd9.1/4.7.3/../../../ > include_dirs = > /usr/include:/usr/local/include:/usr/local/include/suitesparse > src_dirs = /usr/local/src > # search static libraries (.a) in preference to shared ones (.so) > search_static_first = 0 > [atlas] > library_dirs = > /usr/local/lib:/usr/local/lib/gcc47/gcc/x86_64-portbld-freebsd9.1/4.7.3/../../../ > atlas_libs = lapack, blas Just like mine. >> 2. What is the contents of /etc/make.conf on your machine? > cat /etc/make.conf > # added by use.perl 2013-03-25 18:12:09 > PERL_VERSION=5.12.4 > #WITH_MPM=worker Totally innocuous. >> 4. How to you install and upgrade your ports? Build from source >> by hand? Build from source with the help of portmaster, >> poudriere, etc? >> Install binary packages with pkg_* or ports-mgmt/pkg (pkgng)? > 4. > I use portmaster exclusively, to install: > portmaster --packages-build --delete-build-only port-name > to upgrade: > portmaster --dwv port-name I'm taking a stab in the dark here. Based on the '-w' option, might there be any stale libs hanging around in /usr/local/lib/compat/pkg? I haven't been able to reproduce this, so I'm not sure which tree to bark up next. -John
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