I would prefer the second option (modifying the display-buffer-alist). I
don't customize this variable for any of the org-mode buffer but I do for
other buffers. That too, I do it indirectly using the shackle package.
Here's my setup that can give your examples and a brief documentation on
how to control the windows/frames using shackle:
https://github.com/kaushalmodi/.emacs.d/blob/master/setup-files/setup-shackle.el

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