BTW, After I revert SPARK-7841, I can see all the jars under lib_managed/jars
On Tue, Nov 17, 2015 at 2:46 PM, Jeff Zhang <zjf...@gmail.com> wrote: > Hi Josh, > > I notice the comments in https://github.com/apache/spark/pull/9575 said > that Datanucleus related jars will still be copied to lib_managed/jars. > But I don't see any jars under lib_managed/jars. The weird thing is that I > see the jars on another machine, but could not see jars on my laptop even > after I delete the whole spark project and start from scratch. Does it > related with environments ? I try to add the following code in > SparkBuild.scala to track the issue, it shows that the jars is empty. Any > thoughts on that ? > > > deployDatanucleusJars := { > val jars: Seq[File] = (fullClasspath in assembly).value.map(_.data) > .filter(_.getPath.contains("org.datanucleus")) > // this is what I added > println("*********************************************") > println("fullClasspath:"+fullClasspath) > println("assembly:"+assembly) > println("jars:"+jars.map(_.getAbsolutePath()).mkString(",")) > // > > > On Mon, Nov 16, 2015 at 4:51 PM, Jeff Zhang <zjf...@gmail.com> wrote: > >> This is the exception I got >> >> 15/11/16 16:50:48 WARN metastore.HiveMetaStore: Retrying creating default >> database after error: Class >> org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found. >> javax.jdo.JDOFatalUserException: Class >> org.datanucleus.api.jdo.JDOPersistenceManagerFactory was not found. >> at >> javax.jdo.JDOHelper.invokeGetPersistenceManagerFactoryOnImplementation(JDOHelper.java:1175) >> at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:808) >> at javax.jdo.JDOHelper.getPersistenceManagerFactory(JDOHelper.java:701) >> at >> org.apache.hadoop.hive.metastore.ObjectStore.getPMF(ObjectStore.java:365) >> at >> org.apache.hadoop.hive.metastore.ObjectStore.getPersistenceManager(ObjectStore.java:394) >> at >> org.apache.hadoop.hive.metastore.ObjectStore.initialize(ObjectStore.java:291) >> at >> org.apache.hadoop.hive.metastore.ObjectStore.setConf(ObjectStore.java:258) >> at org.apache.hadoop.util.ReflectionUtils.setConf(ReflectionUtils.java:73) >> at >> org.apache.hadoop.util.ReflectionUtils.newInstance(ReflectionUtils.java:133) >> at >> org.apache.hadoop.hive.metastore.RawStoreProxy.<init>(RawStoreProxy.java:57) >> at >> org.apache.hadoop.hive.metastore.RawStoreProxy.getProxy(RawStoreProxy.java:66) >> at >> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.newRawStore(HiveMetaStore.java:593) >> at >> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.getMS(HiveMetaStore.java:571) >> at >> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.createDefaultDB(HiveMetaStore.java:620) >> at >> org.apache.hadoop.hive.metastore.HiveMetaStore$HMSHandler.init(HiveMetaStore.java:461) >> at >> org.apache.hadoop.hive.metastore.RetryingHMSHandler.<init>(RetryingHMSHandler.java:66) >> at >> org.apache.hadoop.hive.metastore.RetryingHMSHandler.getProxy(RetryingHMSHandler.java:72) >> at >> org.apache.hadoop.hive.metastore.HiveMetaStore.newRetryingHMSHandler(HiveMetaStore.java:5762) >> at >> org.apache.hadoop.hive.metastore.HiveMetaStoreClient.<init>(HiveMetaStoreClient.java:199) >> at >> org.apache.hadoop.hive.ql.metadata.SessionHiveMetaStoreClient.<init>(SessionHiveMetaStoreClient.java:74) >> at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) >> at >> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) >> at >> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) >> at java.lang.reflect.Constructor.newInstance(Constructor.java:526) >> at >> org.apache.hadoop.hive.metastore.MetaStoreUtils.newInstance(MetaStoreUtils.java:1521) >> at >> org.apache.hadoop.hive.metastore.RetryingMetaStoreClient.<init>(RetryingMetaStoreClient.java:86) >> >> On Mon, Nov 16, 2015 at 4:47 PM, Jeff Zhang <zjf...@gmail.com> wrote: >> >>> It's about the datanucleus related jars which is needed by spark sql. >>> Without these jars, I could not call data frame related api ( I make >>> HiveContext enabled) >>> >>> >>> >>> On Mon, Nov 16, 2015 at 4:10 PM, Josh Rosen <joshro...@databricks.com> >>> wrote: >>> >>>> As of https://github.com/apache/spark/pull/9575, Spark's build will no >>>> longer place every dependency JAR into lib_managed. Can you say more about >>>> how this affected spark-shell for you (maybe share a stacktrace)? >>>> >>>> On Mon, Nov 16, 2015 at 12:03 AM, Jeff Zhang <zjf...@gmail.com> wrote: >>>> >>>>> >>>>> Sometimes, the jars under lib_managed is missing. And after I rebuild >>>>> the spark, the jars under lib_managed is still not downloaded. This would >>>>> cause the spark-shell fail due to jars missing. Anyone has hit this weird >>>>> issue ? >>>>> >>>>> >>>>> >>>>> -- >>>>> Best Regards >>>>> >>>>> Jeff Zhang >>>>> >>>> >>>> >>> >>> >>> -- >>> Best Regards >>> >>> Jeff Zhang >>> >> >> >> >> -- >> Best Regards >> >> Jeff Zhang >> > > > > -- > Best Regards > > Jeff Zhang > -- Best Regards Jeff Zhang
