Sorry for the confusion re: threads. > Hi Sean > The debug lines in reference to...? -- In case you had inserted extra lines in the code to log information for debugging.
> If you're thinking about my LabValueFinder conversation with Kean the other > day, I've been working with him on another email thread and we've found > some answers. Is that what you were interested in? -- Yes, sorry for any confusion. Sean >Peter ________________________________________ From: Kean Kaufmann <k...@recordsone.com> Sent: Sunday, December 27, 2020 10:23 AM To: dev@ctakes.apache.org Cc: pabramowit...@gmail.com Subject: Re: Lab Value Finder [EXTERNAL] * External Email - Caution * > I've attached the Junit test based off your unit test and its debug output. You'll have to change the package name, though. Hi Peter -- Yes, that does sound weird. Not seeing an attachment. Send it along and I'll give troubleshooting a shot. Happy holidays, everybody. On Thu, Dec 24, 2020 at 7:21 AM Peter Abramowitsch <pabramowit...@gmail.com> wrote: > Hi Kean > I hope this doesn't make you regret having mentioned that you wrote the > LabValueFinder in an email a few weeks back... (:-) > > I've been trying to figure out why it isn't working for me in a production > setting. > > So I'm now just running it with its own unit tests (which I turned into a > simple Junit test) against the usual sno_rx_16ab dictionary. They all > fail. I added one extremely simple test to your more complex ones, but > that fails too - which makes me think there's something fundamental that > may be easy to fix > > It finds the concepts and many of the candidate "values" but matches the > wrong value or no value with a concept. The debug output shows odd things > like this: Two entries for one concept but with different search windows, > one of them with window begin and end swapped. > > > *24 Dec 2020 12:56:38 DEBUG LabValueFinder - Seeking value for: > LabMention(14-21): Lactate between 21 and 1424 Dec 2020 12:56:38 DEBUG > LabValueFinder - Seeking value for: LabMention(14-21): Lactate between 21 > and 29* > > I've been going through the code, but it would probably be easier for you > to spot the issue rather than a person unfamiliar with it. Do you have a > moment? > > I've attached the Junit test based off your unit test and its debug > output. You'll have to change the package name, though. > > Peter >
