Hi, I am building the cTAKES developer version using the following command.
mvn --fail-at-end --errors --update-snapshots clean install sonar:sonar -DskipTests=false -Dsonar.scm.provider=svn -Dsonar.host.url= https://builds.apache.org/analysis I also tried the following command: mvn clean install For both I get the following error: [*INFO*] *-------------------< *org.apache.ctakes:ctakes-ytex* >--------------------* [*INFO*] *Building Apache cTAKES YTEX 4.0.1-SNAPSHOT [48/53]* [*INFO*] *--------------------------------[ jar ]---------------------------------* [*INFO*] [*INFO*] *--- *maven-clean-plugin:2.4.1:clean *(default-clean)* @ ctakes-ytex* ---* [*INFO*] Deleting /Users/mamir/projects/ctakes/trunk/ctakes-ytex/target [*INFO*] [*INFO*] *--- *jaxb2-maven-plugin:1.6:xjc *(default)* @ ctakes-ytex* ---* [*INFO*] Generating source... [*INFO*] parsing a schema... [*INFO*] *------------------------------------------------------------------------* [*INFO*] *Reactor Summary for Apache cTAKES 4.0.1-SNAPSHOT:* [*INFO*] [*INFO*] Apache cTAKES ...................................... *SUCCESS* [ 0.870 s] [*INFO*] ctakes-gui-res ..................................... *SUCCESS* [ 0.862 s] [*INFO*] Apache cTAKES Resources coreference ................ *SUCCESS* [ 3.261 s] [*INFO*] Apache cTAKES Resources temporal ................... *SUCCESS* [ 0.584 s] [*INFO*] Apache cTAKES Resources relation-extractor ......... *SUCCESS* [ 0.267 s] [*INFO*] Apache cTAKES Resources dictionary-lookup-fast-res . *SUCCESS* [ 0.945 s] [*INFO*] Apache cTAKES Resources core ....................... *SUCCESS* [ 0.355 s] [*INFO*] Apache cTAKES common type system ................... *SUCCESS* [ 3.086 s] [*INFO*] Apache cTAKES utils ................................ *SUCCESS* [ 0.783 s] [*INFO*] Apache cTAKES core ................................. *SUCCESS* [ 5.913 s] [*INFO*] Apache cTAKES dictionary lookup fast ............... *SUCCESS* [ 0.890 s] [*INFO*] Apache cTAKES document preprocessor ................ *SUCCESS* [ 0.911 s] [*INFO*] Apache cTAKES Resources lvg ........................ *SUCCESS* [ 11.864 s] [*INFO*] Apache cTAKES LVG lexical tools .................... *SUCCESS* [ 0.719 s] [*INFO*] Apache cTAKES Resources ne-contexts ................ *SUCCESS* [ 0.226 s] [*INFO*] Apache cTAKES named entity contexts ................ *SUCCESS* [ 1.503 s] [*INFO*] Apache cTAKES Resources assertion .................. *SUCCESS* [ 1.482 s] [*INFO*] Apache cTAKES Resources constituency-parser ........ *SUCCESS* [ 1.999 s] [*INFO*] Apache cTAKES Constituency Parser .................. *SUCCESS* [ 0.769 s] [*INFO*] Apache cTAKES Resources dependency-parser .......... *SUCCESS* [ 14.499 s] [*INFO*] Apache cTAKES Resources pos-tagger ................. *SUCCESS* [ 0.878 s] [*INFO*] Apache cTAKES part-of-speech tagger ................ *SUCCESS* [ 1.723 s] [*INFO*] Apache cTAKES Dependency Parser .................... *SUCCESS* [ 17.419 s] [*INFO*] Apache cTAKES context dependent tokenizer .......... *SUCCESS* [ 1.547 s] [*INFO*] Apache cTAKES Resources ctakes-chunker-res ......... *SUCCESS* [ 0.822 s] [*INFO*] Apache cTAKES chunker .............................. *SUCCESS* [ 0.835 s] [*INFO*] Apache cTAKES Assertion ............................ *SUCCESS* [ 1.726 s] [*INFO*] ctakes-clinical-pipeline-res ....................... *SUCCESS* [ 0.200 s] [*INFO*] Apache cTAKES ctakes-clinical-pipeline ............. *SUCCESS* [ 1.046 s] [*INFO*] Apache cTAKES Relation Extractor ................... *SUCCESS* [ 3.062 s] [*INFO*] Apache cTAKES Temporal Information Extraction ...... *SUCCESS* [ 52.554 s] [*INFO*] Apache cTAKES CoReference Resolver ................. *SUCCESS* [ 2.403 s] [*INFO*] ctakes-gui ......................................... *SUCCESS* [ 1.531 s] [*INFO*] Apache cTAKES fhir support ......................... *SUCCESS* [ 0.759 s] [*INFO*] Apache cTAKES Resources dictionary-lookup .......... *SUCCESS* [ 7.312 s] [*INFO*] Apache cTAKES dictionary lookup .................... *SUCCESS* [ 0.711 s] [*INFO*] Apache cTAKES Resources drug-ner ................... *SUCCESS* [ 0.272 s] [*INFO*] Apache cTAKES Drug NER ............................. *SUCCESS* [ 1.158 s] [*INFO*] Apache cTAKES Resources side-effect ................ *SUCCESS* [ 0.268 s] [*INFO*] Apache cTAKES Side Effects ......................... *SUCCESS* [ 0.837 s] [*INFO*] Apache cTAKES Resources smoking-status ............. *SUCCESS* [ 0.347 s] [*INFO*] Apache cTAKES Smoking Status ....................... *SUCCESS* [ 1.081 s] [*INFO*] Apache cTAKES Resources assertion-zoner ............ *SUCCESS* [ 0.296 s] [*INFO*] Apache cTAKES Assertion's zoner .................... *SUCCESS* [ 0.686 s] [*INFO*] ctakes-examples-res ................................ *SUCCESS* [ 0.443 s] [*INFO*] ctakes-examples .................................... *SUCCESS* [ 1.060 s] [*INFO*] Apache cTAKES Resources ctakes-ytex-res ............ *SUCCESS* [ 0.321 s] [*INFO*] Apache cTAKES YTEX ................................. *FAILURE* [ 0.666 s] [*INFO*] Apache cTAKES YTEX UIMA ............................ *SKIPPED* [*INFO*] Apache cTAKES YTEX Web ............................. *SKIPPED* [*INFO*] Apache cTAKES Distribution ......................... *SKIPPED* [*INFO*] Apache cTAKES Regression-test ...................... *SKIPPED* [*INFO*] Apache cTAKES template filler ...................... *SKIPPED* [*INFO*] *------------------------------------------------------------------------* [*INFO*] *BUILD FAILURE* [*INFO*] *------------------------------------------------------------------------* [*INFO*] Total time: 02:34 min [*INFO*] Finished at: 2019-07-17T17:53:36-07:00 [*INFO*] *------------------------------------------------------------------------* --------------------------------------------------- constituent[0]: file:/Users/mamir/apache-maven-3.6.1/conf/logging/ constituent[1]: 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file:/Users/mamir/apache-maven-3.6.1/lib/wagon-provider-api-3.3.2.jar --------------------------------------------------- Exception in thread "main" java.lang.Error: java.lang.reflect.InvocationTargetException at com.sun.tools.xjc.reader.Ring.get(Ring.java:113) at com.sun.tools.xjc.reader.xmlschema.BGMBuilder.<init>(BGMBuilder.java:147) at com.sun.tools.xjc.reader.xmlschema.BGMBuilder.build(BGMBuilder.java:117) at com.sun.tools.xjc.ModelLoader.annotateXMLSchema(ModelLoader.java:425) at com.sun.tools.xjc.ModelLoader.load(ModelLoader.java:174) at com.sun.tools.xjc.ModelLoader.load(ModelLoader.java:119) at com.sun.tools.xjc.Driver.run(Driver.java:333) at org.codehaus.mojo.jaxb2.AbstractXjcMojo.execute(AbstractXjcMojo.java:316) at org.apache.maven.plugin.DefaultBuildPluginManager.executeMojo(DefaultBuildPluginManager.java:137) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:210) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:156) at org.apache.maven.lifecycle.internal.MojoExecutor.execute(MojoExecutor.java:148) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:117) at org.apache.maven.lifecycle.internal.LifecycleModuleBuilder.buildProject(LifecycleModuleBuilder.java:81) at org.apache.maven.lifecycle.internal.builder.singlethreaded.SingleThreadedBuilder.build(SingleThreadedBuilder.java:56) at org.apache.maven.lifecycle.internal.LifecycleStarter.execute(LifecycleStarter.java:128) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:305) at org.apache.maven.DefaultMaven.doExecute(DefaultMaven.java:192) at org.apache.maven.DefaultMaven.execute(DefaultMaven.java:105) at org.apache.maven.cli.MavenCli.execute(MavenCli.java:956) at org.apache.maven.cli.MavenCli.doMain(MavenCli.java:288) at org.apache.maven.cli.MavenCli.main(MavenCli.java:192) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:567) at org.codehaus.plexus.classworlds.launcher.Launcher.launchEnhanced(Launcher.java:282) at org.codehaus.plexus.classworlds.launcher.Launcher.launch(Launcher.java:225) at org.codehaus.plexus.classworlds.launcher.Launcher.mainWithExitCode(Launcher.java:406) at org.codehaus.plexus.classworlds.launcher.Launcher.main(Launcher.java:347) Caused by: java.lang.reflect.InvocationTargetException at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500) at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481) at com.sun.tools.xjc.reader.Ring.get(Ring.java:102) ... 29 more Caused by: java.lang.Error: java.lang.reflect.InvocationTargetException at com.sun.tools.xjc.reader.Ring.get(Ring.java:113) at com.sun.tools.xjc.reader.xmlschema.BindingComponent.getClassSelector(BindingComponent.java:65) at com.sun.tools.xjc.reader.xmlschema.ColorBinder.<init>(ColorBinder.java:62) at com.sun.tools.xjc.reader.xmlschema.BindGreen.<init>(BindGreen.java:63) ... 35 more Caused by: java.lang.reflect.InvocationTargetException at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.base/java.lang.reflect.Constructor.newInstanceWithCaller(Constructor.java:500) at java.base/java.lang.reflect.Constructor.newInstance(Constructor.java:481) at com.sun.tools.xjc.reader.Ring.get(Ring.java:102) ... 38 more Caused by: java.lang.NoClassDefFoundError: javax/activation/MimeTypeParseException at java.base/java.lang.Class.getDeclaredConstructors0(Native Method) at java.base/java.lang.Class.privateGetDeclaredConstructors(Class.java:3143) at java.base/java.lang.Class.getConstructor0(Class.java:3348) at java.base/java.lang.Class.getDeclaredConstructor(Class.java:2559) at com.sun.tools.xjc.reader.Ring.get(Ring.java:100) at com.sun.tools.xjc.reader.xmlschema.DefaultClassBinder.<init>(DefaultClassBinder.java:98) at com.sun.tools.xjc.reader.xmlschema.ClassSelector.<init>(ClassSelector.java:214) ... 44 more Caused by: java.lang.ClassNotFoundException: javax.activation.MimeTypeParseException at org.codehaus.plexus.classworlds.strategy.SelfFirstStrategy.loadClass(SelfFirstStrategy.java:50) at org.codehaus.plexus.classworlds.realm.ClassRealm.unsynchronizedLoadClass(ClassRealm.java:271) at org.codehaus.plexus.classworlds.realm.ClassRealm.loadClass(ClassRealm.java:247) at org.codehaus.plexus.classworlds.realm.ClassRealm.loadClass(ClassRealm.java:239) ... 51 more I really appreciate any help. Thanks. Maral
