I think long term the code just needs to be upgraded to work with Java 8 so manual intervention is not needed. It would be nice if the instructions mentioned the bin.xml and the pom to include the database resources you may need. I am sure, some database(s) jars cannot be included because of licensing concerns.
We are working with 3.2.2 version of cTAKES and the group is working to release 3.2.3, so I don't know what has already been included. We were able to get YTEX started but it is still not fully functional. -----Original Message----- From: Leander Melms [mailto:me...@students.uni-marburg.de] Sent: Friday, March 03, 2017 10:15 AM To: dev@ctakes.apache.org Subject: Re: [EXTERNAL] Re: YTEX User Inferace Users? Joyce, I was finally able to run the YTEX database install! Although it only took 5 mins and most of the tables are still empty. But this is a huge success. Thank you for your time and help! I would not have been able to get it running without your guidance. I wondered if we should rewrite the guide for Java 8. I could summarize the steps you've outlined for the community. Do you have any resources and/or experiance for ytex web? Did you managed to get it running? Again, thank you for the help. Really made my day! Leander > On 3 Mar 2017, at 16:38, Leander Melms <me...@students.uni-marburg.de> wrote: > > I'm following allong the guide at > https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation > <https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation>, which > is the db install. I'm stuck at 7) Execute the setup script. > > It is able to connect to the DB. Later on, it fails through with the > error. It happens after > > nohup ../../ant -f build-setup.xml all > setup.out 2>&1 & tail -f > setup.out > > Leander >> On 3 Mar 2017, at 16:25, Dunlop, Joyce (HP) <joyce.dun...@va.gov> wrote: >> >> Remind me ... are you getting the error when you try to start YTEX web or >> run the YTEX database install? >> >> -----Original Message----- >> From: Leander Melms [mailto:me...@students.uni-marburg.de] >> Sent: Friday, March 03, 2017 9:15 AM >> To: dev@ctakes.apache.org >> Subject: Re: [EXTERNAL] Re: YTEX User Inferace Users? >> >> Yes it is - I've got ehcache-core-2.4.6.jar in the lib folder. Any ideas why >> ctakes can't find it? >> >> >>> On 3 Mar 2017, at 16:04, Dunlop, Joyce (HP) <joyce.dun...@va.gov> wrote: >>> >>> You are right id does not need to be the parent pom if it was already >>> included in the YTEX pom. >>> >>> Did you verify the ehcache-core jar is in the lib folder after you compile >>> and package? >>> >>> >>> >>> -----Original Message----- >>> From: Leander Melms [mailto:me...@students.uni-marburg.de] >>> Sent: Friday, March 03, 2017 8:59 AM >>> To: dev@ctakes.apache.org >>> Subject: Re: [EXTERNAL] Re: YTEX User Inferace Users? >>> >>> Joyce, >>> >>> I've added >>> >>> <dependency> >>> <groupId>net.sf.ehcache</groupId> >>> <artifactId>ehcache-core</artifactId> >>> <version>2.4.6</version> >>> </dependency> >>> >>> to my pom file at the root dir. It is already included in the pom.xml of >>> ./ctakes-ytex. It felt wrong, but I gave it a shot resulting in the same >>> error. Where do I have to add the ehcache-core dependency? >>> >>> Leander >>> >>> >>>> On 3 Mar 2017, at 15:16, Dunlop, Joyce (HP) <joyce.dun...@va.gov> wrote: >>>> >>>> Leander, >>>> You are still making progress. >>>> >>>> Your next issue is... >>>> >>>> nested exception is java.lang.ClassNotFoundException: >>>> org.springframework.cache.ehcache.EhCacheManagerFactoryBean >>>> >>>> It cannot find ehcache >>>> >>>> My pom has ehcache-core version 2.4.6 >>>> >>>> Joyce >>>> >>>> -----Original Message----- >>>> From: Leander Melms [mailto:me...@students.uni-marburg.de] >>>> Sent: Thursday, March 02, 2017 4:41 PM >>>> To: dev@ctakes.apache.org >>>> Subject: Re: [EXTERNAL] Re: YTEX User Inferace Users? >>>> >>>> I've modified the bin.xml accordingly and hibernate, weka and the mysql >>>> connector are now available in the classpath! Thank you for your help. I >>>> really appreciate that! >>>> >>>> But still, I'm getting the same output like before, complaining about >>>> BeanCreationException: Error creating bean with name >>>> 'kernelApplicationContext', BeanInstantiationException: Could not >>>> instantiate bean class >>>> [org.springframework.context.support.ClassPathXmlApplicationContext] and >>>> so on. >>>> >>>> Any ideas what I'm doing wrong? >>>> >>>> [java] 02 Mar 2017 23:34:42 WARN ClassPathXmlApplicationContext - >>>> Exception encountered during context initialization - cancelling >>>> refresh attempt: >>>> org.springframework.beans.factory.BeanCreationException: Error >>>> creating bean with name 'kernelApplicationContext' defined in URL >>>> [jar:file:/Users/leandermelms/coding/ctakes-3.2.3-spring/lib/ctakes >>>> -ytex-web-3.2.3-SNAPSHOT-classes.jar!/org/apache/ctakes/ytex/kernel >>>> BeanRefContext.xml]: Instantiation of bean failed; nested exception >>>> is org.springframework.beans.BeanInstantiationException: Could not >>>> instantiate bean class >>>> [org.springframework.context.support.ClassPathXmlApplicationContext >>>> ]: Constructor threw exception; nested exception is >>>> org.springframework.beans.factory.CannotLoadBeanClassException: >>>> Cannot find class >>>> [org.springframework.cache.ehcache.EhCacheManagerFactoryBean] for >>>> bean with name 'cacheManager' defined in class path resource >>>> [org/apache/ctakes/ytex/beans-kernel.xml]; nested exception is >>>> java.lang.ClassNotFoundException: >>>> org.springframework.cache.ehcache.EhCacheManagerFactoryBean >>>> [java] 02 Mar 2017 23:34:42 INFO DefaultListableBeanFactory - >>>> Destroying singletons in >>>> org.springframework.beans.factory.support.DefaultListableBeanFactory@7ed7259e: >>>> defining beans [kernelApplicationContext]; root of factory hierarchy >>>> [java] Exception in thread "main" java.lang.ExceptionInInitializerError >>>> [java] at >>>> org.apache.ctakes.ytex.tools.SetupAuiFirstWord.setupAuiFirstWord(SetupAuiFirstWord.java:190) >>>> [java] at >>>> org.apache.ctakes.ytex.tools.SetupAuiFirstWord.main(SetupAuiFirstWord.java:186) >>>> [java] Caused by: >>>> org.springframework.beans.factory.access.BootstrapException: Unable to >>>> initialize group definition. Group resource name >>>> [classpath*:org/apache/ctakes/ytex/kernelBeanRefContext.xml], factory key >>>> [kernelApplicationContext]; nested exception is >>>> org.springframework.beans.factory.BeanCreationException: Error creating >>>> bean with name 'kernelApplicationContext' defined in URL >>>> [jar:file:/Users/leandermelms/coding/ctakes-3.2.3-spring/lib/ctakes-ytex-web-3.2.3-SNAPSHOT-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]: >>>> Instantiation of bean failed; nested exception is >>>> org.springframework.beans.BeanInstantiationException: Could not >>>> instantiate bean class >>>> [org.springframework.context.support.ClassPathXmlApplicationContext]: >>>> Constructor threw exception; nested exception is >>>> org.springframework.beans.factory.CannotLoadBeanClassException: Cannot >>>> find class [org.springframework.cache.ehcache.EhCacheManagerFactoryBean] >>>> for bean with name 'cacheManager' defined in class path resource >>>> [org/apache/ctakes/ytex/beans-kernel.xml]; nested exception is >>>> java.lang.ClassNotFoundException: >>>> org.springframework.cache.ehcache.EhCacheManagerFactoryBean >>>> [java] at >>>> org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:386) >>>> [java] at >>>> org.apache.ctakes.ytex.kernel.KernelContextHolder.<clinit>(KernelContextHolder.java:29) >>>> [java] ... 2 more >>>> [java] Caused by: >>>> org.springframework.beans.factory.BeanCreationException: Error creating >>>> bean with name 'kernelApplicationContext' defined in URL >>>> [jar:file:/Users/leandermelms/coding/ctakes-3.2.3-spring/lib/ctakes-ytex-web-3.2.3-SNAPSHOT-classes.jar!/org/apache/ctakes/ytex/kernelBeanRefContext.xml]: >>>> Instantiation of bean failed; nested exception is >>>> org.springframework.beans.BeanInstantiationException: Could not >>>> instantiate bean class >>>> [org.springframework.context.support.ClassPathXmlApplicationContext]: >>>> Constructor threw exception; nested exception is >>>> org.springframework.beans.factory.CannotLoadBeanClassException: Cannot >>>> find class [org.springframework.cache.ehcache.EhCacheManagerFactoryBean] >>>> for bean with name 'cacheManager' defined in class path resource >>>> [org/apache/ctakes/ytex/beans-kernel.xml]; nested exception is >>>> java.lang.ClassNotFoundException: >>>> org.springframework.cache.ehcache.EhCacheManagerFactoryBean >>>> [java] at >>>> org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:285) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.autowireConstructor(AbstractAutowireCapableBeanFactory.java:1077) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:981) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:485) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:456) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:293) >>>> [java] at >>>> org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:223) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:290) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:191) >>>> [java] at >>>> org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:638) >>>> [java] at >>>> org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:942) >>>> [java] at >>>> org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:482) >>>> [java] at >>>> org.springframework.context.access.ContextSingletonBeanFactoryLocator.initializeDefinition(ContextSingletonBeanFactoryLocator.java:143) >>>> [java] at >>>> org.springframework.beans.factory.access.SingletonBeanFactoryLocator.useBeanFactory(SingletonBeanFactoryLocator.java:381) >>>> [java] ... 3 more >>>> [java] Caused by: org.springframework.beans.BeanInstantiationException: >>>> Could not instantiate bean class >>>> [org.springframework.context.support.ClassPathXmlApplicationContext]: >>>> Constructor threw exception; nested exception is >>>> org.springframework.beans.factory.CannotLoadBeanClassException: Cannot >>>> find class [org.springframework.cache.ehcache.EhCacheManagerFactoryBean] >>>> for bean with name 'cacheManager' defined in class path resource >>>> [org/apache/ctakes/ytex/beans-kernel.xml]; nested exception is >>>> java.lang.ClassNotFoundException: >>>> org.springframework.cache.ehcache.EhCacheManagerFactoryBean >>>> [java] at >>>> org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:163) >>>> [java] at >>>> org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:121) >>>> [java] at >>>> org.springframework.beans.factory.support.ConstructorResolver.autowireConstructor(ConstructorResolver.java:277) >>>> [java] ... 16 more >>>> [java] Caused by: >>>> org.springframework.beans.factory.CannotLoadBeanClassException: Cannot >>>> find class [org.springframework.cache.ehcache.EhCacheManagerFactoryBean] >>>> for bean with name 'cacheManager' defined in class path resource >>>> [org/apache/ctakes/ytex/beans-kernel.xml]; nested exception is >>>> java.lang.ClassNotFoundException: >>>> org.springframework.cache.ehcache.EhCacheManagerFactoryBean >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractBeanFactory.resolveBeanClass(AbstractBeanFactory.java:1278) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.predictBeanType(AbstractAutowireCapableBeanFactory.java:573) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractBeanFactory.isFactoryBean(AbstractBeanFactory.java:1347) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractBeanFactory.isFactoryBean(AbstractBeanFactory.java:913) >>>> [java] at >>>> org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:619) >>>> [java] at >>>> org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:942) >>>> [java] at >>>> org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:482) >>>> [java] at >>>> org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:139) >>>> [java] at >>>> org.springframework.context.support.ClassPathXmlApplicationContext.<init>(ClassPathXmlApplicationContext.java:93) >>>> [java] at >>>> sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) >>>> [java] at >>>> sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:62) >>>> [java] at >>>> sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) >>>> [java] at >>>> java.lang.reflect.Constructor.newInstance(Constructor.java:423) >>>> [java] at >>>> org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:148) >>>> [java] ... 18 more >>>> [java] Caused by: java.lang.ClassNotFoundException: >>>> org.springframework.cache.ehcache.EhCacheManagerFactoryBean >>>> [java] at java.net.URLClassLoader.findClass(URLClassLoader.java:381) >>>> [java] at java.lang.ClassLoader.loadClass(ClassLoader.java:424) >>>> [java] at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:331) >>>> [java] at java.lang.ClassLoader.loadClass(ClassLoader.java:357) >>>> [java] at >>>> org.springframework.util.ClassUtils.forName(ClassUtils.java:268) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractBeanDefinition.resolveBeanClass(AbstractBeanDefinition.java:419) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractBeanFactory.doResolveBeanClass(AbstractBeanFactory.java:1299) >>>> [java] at >>>> org.springframework.beans.factory.support.AbstractBeanFactory.resolveBeanClass(AbstractBeanFactory.java:1270) >>>> [java] ... 31 more >>>> >>>> BUILD FAILED >>>> >>>> Leander >>>>> On 2 Mar 2017, at 22:45, Dunlop, Joyce (HP) <joyce.dun...@va.gov> wrote: >>>>> >>>>> hibernate >>>> >>>> >>> >>> >> >> >
