Sounds good to me. Thanks! -----Original Message----- From: dev-return-2289-Masanz.James=mayo....@ctakes.apache.org [mailto:dev-return-2289-Masanz.James=mayo....@ctakes.apache.org] On Behalf Of Tim Miller Sent: Friday, December 06, 2013 11:36 AM To: dev@ctakes.apache.org Subject: Re: cTAKES Groovy...
Sure, I checked it in under ctakes-constituency-parser/scripts/groovy/parser.groovy per my understanding of the thread from a few days go about where to put these things. Tim On 12/06/2013 12:03 PM, Masanz, James J. wrote: > Tim, could you check that change in you made to not download the big > resources, or post it somewhere temporarily. > > I'm having this issue when trying to run the groovy script (I'm on Windows > 7, if that makes a difference) and having it faster might help debug. > > C:\using-groovy> groovy parser.groovy test-data-for-groovy > Reading from directory: test-data-for-groovy > Downloading: > http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/sd-med-model.zip > Caught: groovy.lang.MissingMethodException: No signature of method: > java.io.BufferedOutputStream.rightShift() is applicable for argument types: > (sun.net.www.protocol.http.HttpURLConnection$HttpInputStream) values: > [sun.net.www.protocol.http.HttpURLConnection$HttpInputStream@74be95bf] > Possible solutions: leftShift(java.lang.Object), > leftShift(java.io.InputStream), leftShift([B) > groovy.lang.MissingMethodException: No signature of method: > java.io.BufferedOutputStream.rightShift() is applicable for argument types: > (sun.net.www.protocol.http.HttpURLConnection$HttpInputStream) values: > [sun.net.www.protocol.http.HttpURLConnection$HttpInputStream@74be95bf] > Possible solutions: leftShift(java.lang.Object), > leftShift(java.io.InputStream), leftShift([B) > at parser.downloadFile(parser.groovy:99) > at parser.run(parser.groovy:64) > > Anyone run into such an error from groovy? Anyone else running groovy on Win7? > > -- James > > > -----Original Message----- > From: dev-return-2270-Masanz.James=mayo....@ctakes.apache.org > [mailto:dev-return-2270-Masanz.James=mayo....@ctakes.apache.org] On Behalf Of > Tim Miller > Sent: Wednesday, December 04, 2013 9:09 AM > To: dev@ctakes.apache.org > Subject: Re: cTAKES Groovy... > > Very cool. I was noticing that it was downloading the umls resources which > the parser itself doesn't need -- so I made a change to not grab > clinical-pipeline and grab directly the things it was getting through that > reference and now it runs even faster with only a 35M initial download. > > I'd like to check in my change -- should we keep working out of sandbox or > can we maybe put groovy scripts somewhere alongside the projects they belong > to? Maybe in the scripts/ directory or scripts/groovy, scripts/perl, etc.? > Any opinions on this? > > Tim > > > On 11/27/2013 12:19 PM, Chen, Pei wrote: >> The sample constituency parser printer should be working now... >> Just copy and paste the text to parser.groovy and make it executable. >> All you should need is groovy installed on your machine. >> http://svn.apache.org/repos/asf/ctakes/sandbox/groovy/parser.groovy >> $ parser.groovy input >> Reading from directory: input >> (TOP (S (NP-SBJ (NN patient)) (VP (VBD took) (NP (NP (NNS 50mg)) (PP >> (IN of) (NP (NP (NN aspirin)) (PP (IN for) (NP (NP (NN pain)) (PP-LOC >> (IN in) (NP (NN knee)))))))))(. .))) >> >> Maybe we could create one that will output UMLS CUI/Codes... and then others >> could easily modify to their needs. >> >> --Pei >>> -----Original Message----- >>> From: William Karl Thompson [mailto:w...@northwestern.edu] >>> Sent: Tuesday, November 26, 2013 10:46 PM >>> To: dev@ctakes.apache.org >>> Subject: RE: cTAKES Groovy... >>> >>> That is very cool! >>> >>> Since we're talking Groovy, I'd just like make a plug for Gradle, a >>> fantastic build/deployment/dependency management tool that is in many >>> ways much nicer to work with than Maven, though it plays nicely with >>> Maven (for example, it can use Maven repositories). Gradle is also proven >>> technology: >>> it's the build tool for the Android operating system. >>> ________________________________________ >>> From: Chen, Pei [pei.c...@childrens.harvard.edu] >>> Sent: Tuesday, November 26, 2013 4:13 PM >>> To: dev@ctakes.apache.org >>> Subject: cTAKES Groovy... >>> >>> Tim had a good end user use case: >>> I just want to use the ctakes constituency parser and output the tree >>> text to console. >>> So I was inspired by Richard example of groovy... >>> Check out: >>> http://svn.apache.org/repos/asf/ctakes/sandbox/groovy/parser.groovy >>> >>> The groovy script will "Automagically" download the required >>> classes,jars,resources and automatically runs. >>> No longer requires the user to have any knowledge of UIMA, cTAKES, etc. >>> Sample: >>> $ parser.groovy input >>> Reading from directory: input >>> patient took 50mg of aspirin for pain in knee. >>> begin:0 end:48 >>> >>> Pretty cool, 'eh... >>> --Pei
