Sure, I checked it in under
ctakes-constituency-parser/scripts/groovy/parser.groovy per my
understanding of the thread from a few days go about where to put these
things.
Tim
On 12/06/2013 12:03 PM, Masanz, James J. wrote:
Tim, could you check that change in you made to not download the big resources,
or post it somewhere temporarily.
I'm having this issue when trying to run the groovy script (I'm on Windows 7,
if that makes a difference) and having it faster might help debug.
C:\using-groovy> groovy parser.groovy test-data-for-groovy
Reading from directory: test-data-for-groovy
Downloading:
http://svn.apache.org/repos/asf/ctakes/trunk/ctakes-core-res/src/main/resources/org/apache/ctakes/core/sentdetect/sd-med-model.zip
Caught: groovy.lang.MissingMethodException: No signature of method:
java.io.BufferedOutputStream.rightShift() is applicable for argument types:
(sun.net.www.protocol.http.HttpURLConnection$HttpInputStream) values:
[sun.net.www.protocol.http.HttpURLConnection$HttpInputStream@74be95bf]
Possible solutions: leftShift(java.lang.Object),
leftShift(java.io.InputStream), leftShift([B)
groovy.lang.MissingMethodException: No signature of method:
java.io.BufferedOutputStream.rightShift() is applicable for argument types:
(sun.net.www.protocol.http.HttpURLConnection$HttpInputStream) values:
[sun.net.www.protocol.http.HttpURLConnection$HttpInputStream@74be95bf]
Possible solutions: leftShift(java.lang.Object),
leftShift(java.io.InputStream), leftShift([B)
at parser.downloadFile(parser.groovy:99)
at parser.run(parser.groovy:64)
Anyone run into such an error from groovy? Anyone else running groovy on Win7?
-- James
-----Original Message-----
From: dev-return-2270-Masanz.James=mayo....@ctakes.apache.org
[mailto:dev-return-2270-Masanz.James=mayo....@ctakes.apache.org] On Behalf Of
Tim Miller
Sent: Wednesday, December 04, 2013 9:09 AM
To: dev@ctakes.apache.org
Subject: Re: cTAKES Groovy...
Very cool. I was noticing that it was downloading the umls resources which the
parser itself doesn't need -- so I made a change to not grab clinical-pipeline
and grab directly the things it was getting through that reference and now it
runs even faster with only a 35M initial download.
I'd like to check in my change -- should we keep working out of sandbox or can
we maybe put groovy scripts somewhere alongside the projects they belong to?
Maybe in the scripts/ directory or scripts/groovy, scripts/perl, etc.? Any
opinions on this?
Tim
On 11/27/2013 12:19 PM, Chen, Pei wrote:
The sample constituency parser printer should be working now...
Just copy and paste the text to parser.groovy and make it executable.
All you should need is groovy installed on your machine.
http://svn.apache.org/repos/asf/ctakes/sandbox/groovy/parser.groovy
$ parser.groovy input
Reading from directory: input
(TOP (S (NP-SBJ (NN patient)) (VP (VBD took) (NP (NP (NNS 50mg)) (PP
(IN of) (NP (NP (NN aspirin)) (PP (IN for) (NP (NP (NN pain)) (PP-LOC
(IN in) (NP (NN knee)))))))))(. .)))
Maybe we could create one that will output UMLS CUI/Codes... and then others
could easily modify to their needs.
--Pei
-----Original Message-----
From: William Karl Thompson [mailto:w...@northwestern.edu]
Sent: Tuesday, November 26, 2013 10:46 PM
To: dev@ctakes.apache.org
Subject: RE: cTAKES Groovy...
That is very cool!
Since we're talking Groovy, I'd just like make a plug for Gradle, a
fantastic build/deployment/dependency management tool that is in many
ways much nicer to work with than Maven, though it plays nicely with
Maven (for example, it can use Maven repositories). Gradle is also proven
technology:
it's the build tool for the Android operating system.
________________________________________
From: Chen, Pei [pei.c...@childrens.harvard.edu]
Sent: Tuesday, November 26, 2013 4:13 PM
To: dev@ctakes.apache.org
Subject: cTAKES Groovy...
Tim had a good end user use case:
I just want to use the ctakes constituency parser and output the tree
text to console.
So I was inspired by Richard example of groovy...
Check out:
http://svn.apache.org/repos/asf/ctakes/sandbox/groovy/parser.groovy
The groovy script will "Automagically" download the required
classes,jars,resources and automatically runs.
No longer requires the user to have any knowledge of UIMA, cTAKES, etc.
Sample:
$ parser.groovy input
Reading from directory: input
patient took 50mg of aspirin for pain in knee.
begin:0 end:48
Pretty cool, 'eh...
--Pei
