thanks for the bug report. this sounds like it could be a feauture called "Focus stealing prevention" or possibly a bug in gksu
please can read Bug #41623 and Bug #31487 and check that it is neither of those.
** Changed in: Ubuntu
Sourcepackagename: None => metacity
Status: Unconfirmed => Needs Info
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Windows are not got properly in the foreground.
https://launchpad.net/bugs/41744
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