I do not use compiz, desktop effects and I don;t have a 3d accelerator.
I think it is the gnome desktop.  The window closes also if I use Alt+F9.

Changing the appearance theme does not make a difference.   Rebooting
also does not make a difference.

** Also affects: gnome-desktop (Ubuntu)
   Importance: Undecided
       Status: New

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Hardy Alpha 5:  "Minimize window" acts like "CLose window"
https://bugs.launchpad.net/bugs/193334
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