Package: wnpp Severity: wishlist Subject: ITP: pore-c -- processing data from an ONT poreC run Package: wnpp Owner: Steffen Moeller <moel...@debian.org> Severity: wishlist
* Package name : pore-c Version : 0.2.0~rc1 Upstream Author : Copyright: Matthew Pendleton <matthew.pendle...@nanoporetech.com> * URL : https://github.com/nanoporetech/pore-c * License : MPL-2.0 Programming Lang: Python Description : processing data from an ONT poreC run This package is designed to analyse the data from multi-contact pore-C reads. It is similar to the pairtools package in scope, however it is specifically designed to handle multi-contact reads (aka c-walks). It carries out the following operations: . * pre-processing a reference genome to generate auxiliary files used in downstream analyses * creating virtual digests of the reference genome * processing read-sorted BAM files to filter spurious alignments, detect ligation junctions and assign fragments * converting the resulting contacts to a pairs format and a COO-formatted matrix compatible with Cooler for downstream processing. Remark: This package is maintained by Steffen Moeller at https://salsa.debian.org/med-team/pore-c
