Your message dated Tue, 05 Jul 2016 18:00:11 +0000
with message-id <e1bkudn-0000rw...@franck.debian.org>
and subject line Bug#827978: fixed in libfastahack 0.0+20160702-1
has caused the Debian Bug report #827978,
regarding ITP: libfastahack -- library for indexing and sequence extraction
from FASTA files
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
827978: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=827978
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <ti...@debian.org>
* Package name : libfastahack
Version : 0.0+20160309
Upstream Author : Erik Garrison <erik.garri...@gmail.com>
* URL : https://github.com/ekg/fastahack
* License : GPL
Programming Lang: C++
Description : library for indexing and sequence extraction from FASTA
files
fastahack is a small application for indexing and extracting sequences and
subsequences from FASTA files. The included Fasta.cpp library provides a FASTA
reader and indexer that can be embedded into applications which would benefit
from directly reading subsequences from FASTA files. The library automatically
handles index file generation and use.
.
Features:
* FASTA index (.fai) generation for FASTA files
* Sequence extraction
* Subsequence extraction
* Sequence statistics (currently only entropy is provided)
.
Sequence and subsequence extraction use fseek64 to provide fastest-possible
extraction without RAM-intensive file loading operations. This makes fastahack
a useful tool for bioinformaticists who need to quickly extract many
subsequences from a reference FASTA sequence.
Remark: This package is a (pre-)pre-condition for some Debian Med target
software (freebayes). It will be maintained at
https://anonscm.debian.org/git/debian-med/libfastahack.git
--- End Message ---
--- Begin Message ---
Source: libfastahack
Source-Version: 0.0+20160702-1
We believe that the bug you reported is fixed in the latest version of
libfastahack, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 827...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libfastahack package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 05 Jul 2016 15:25:05 +0200
Source: libfastahack
Binary: libfastahack0 libfastahack-dev fastahack
Architecture: source amd64
Version: 0.0+20160702-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
fastahack - utility for indexing and sequence extraction from FASTA files
libfastahack-dev - library for indexing and sequence extraction from FASTA
files (de
libfastahack0 - library for indexing and sequence extraction from FASTA files
(li
Closes: 827978
Changes:
libfastahack (0.0+20160702-1) unstable; urgency=medium
.
* Initial release (Closes: #827978)
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