Le Sat, Apr 27, 2013 at 04:28:27PM +0200, Raphael Hertzog a écrit :
> 
> Also, inspecting VCS is more heavy than say querying the PTS with a REST
> interface.

Hi,

The VCS is the input method.  If there is an easy and secure way (apt-get
install something ?) to do the same with a REST interface, I would be very
intersted.

For the output, while not RESTful, the upstream-medatada.debian.net site allows
the data to be queried by HTTP.

For instance:

$ curl http://upstream-metadata.debian.net/bwa/homepage
http://bio-bwa.sourceforge.net/

$ curl http://upstream-metadata.debian.net/bedtools/homepage
http://code.google.com/p/bedtools/

$ curl http://upstream-metadata.debian.net/bwa/name
Burrows-Wheeler Aligner

$ curl http://upstream-metadata.debian.net/table/name | head
bodr    name    Blue Obelisk Data Repository
alien-hunter    name    Alien_hunter
primer3 name    Primer3
sumo    name    SUMO - Simulation of Urban MObility
adun.app        name    Adun
autodock-vina   name    AutoDock Vina
exonerate       name    Exonerate
r-bioc-qvalue   name    qvalue
concavity       name    ConCavity
elastix name    Elastix

$ curl http://upstream-metadata.debian.net/bwa/yaml-all
Archive: SourceForge
FAQ: http://bio-bwa.sourceforge.net/
Homepage: http://bio-bwa.sourceforge.net/
Name: Burrows-Wheeler Aligner
Reference:
 Article: HengLi07152009
 Author: Li, Heng and Durbin, Richard
 Title: Fast and accurate short read alignment with Burrows-Wheeler transform
 Journal: Bioinformatics
 Volume: 25
 Number: 14
 Pages: 1754-1760
 Year: 2009
 DOI: 10.1093/bioinformatics/btp324
 PMID: 19451168
 URL: http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/14/1754
 Eprint: http://bioinformatics.oxfordjournals.org/cgi/reprint/25/14/1754.pdf
References: http://bio-bwa.sourceforge.net/
Repository: https://github.com/lh3/bwa.git
Repository-Browse: https://github.com/lh3/bwa


This is done by the umegaya package (<http://umegaya.branchable.com/>)

Have a nice day,

-- 
Charles


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