Hi Gianfranco,
On Thu, Dec 17, 2015 at 05:45:19PM +0000, Gianfranco Costamagna wrote:
> I remember something ghc related
>
> https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=787227
> https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=773768
Seems to be the same consequence as I've drawn below. I checked in the
pbuilder chroot
diff --git a/debian/rules b/debian/rules
index 8916f38..3fdf167 100755
--- a/debian/rules
+++ b/debian/rules
@@ -63,6 +63,7 @@ endif
/bin/sh debian/bin/python_fix.sh
override_dh_auto_build:
+ if mount | grep "^proc " ; then echo "proc mounted - fine"; else mount
proc /proc -t proc ; fi
cd build ; make
cp NEWS.txt changelog
and I was able to make the api_java_doc target successfully.
Since I have not seen things like this in the ghc source I wonder if
this should be really the suggested solution to the problem.
Comments?
Kind regards
Andreas.
> --------------------------------------------
> Gio 17/12/15, Andreas Tille <andr...@fam-tille.de> ha scritto:
>
> Oggetto: Re: cmake issue in libsbml: Cannot generate java documentation,
> please specify the Java_JAVADOC_JAR.
> A: "Debian Mentors List" <debian-mentors@lists.debian.org>
> Cc: "Debian Med Packaging Team"
> <debian-med-packag...@lists.alioth.debian.org>, "Ivo Maintz" <i...@maintz.de>
> Data: Giovedì 17 dicembre 2015, 17:26
>
> Hi Kevin,
>
> On Thu, Dec 17, 2015 at 10:44:40PM +1100, Kevin Murray
> wrote:
> >
> > I have pushed a possible fix to the branch
> 'daube/possible-cmake-fix'. I am not
> > sure of the overall effects, the build is taking ages
> on my laptop, but it seems
> > to have fixed the immediate error.
>
> Thanks a lot for this first and very helpful step.
> Following this
> strategy I was even able to work around another issue with
> Java bindings
> which was also solved by setting a variable accordingly.
>
> Finally after 1-2 hours of building I went into
>
> ...
> make[4]: Entering directory
> '/build/libsbml-5.12.0+dfsg/build'
> [100%] Generate Java-API Documentation
> /usr/bin/javac: error while loading shared libraries:
> libjli.so: cannot open shared object file: No such file or
> directory
> docs/CMakeFiles/api_docs_java.dir/build.make:61: recipe for
> target '../docs/formatted/java-api/index.html' failed
> make[4]: *** [../docs/formatted/java-api/index.html] Error
> 127
> make[4]: Leaving directory
> '/build/libsbml-5.12.0+dfsg/build'
> CMakeFiles/Makefile2:1123: recipe for target
> 'docs/CMakeFiles/api_docs_java.dir/all' failed
> make[3]: *** [docs/CMakeFiles/api_docs_java.dir/all] Error
> 2
> make[3]: Leaving directory
> '/build/libsbml-5.12.0+dfsg/build'
> ...
>
>
> When I trow the error message above in a web search it comes
> up with the
> log of bug #548729 which says:
>
>
> This is most likely a lack of
> /proc. Some ld.so features require
> /proc/self/exe.
>
> $ readelf -d /usr/bin/java | grep
> ORIGIN
> 0x000000000000000f
> (RPATH)
> Library rpath:
> [$ORIGIN/../lib/amd64/jli:$ORIGIN/../jre/lib/amd64/jli]
> 0x000000006ffffffb
> (FLAGS_1) Flags:
> ORIGIN
>
> AFAIK, a mounted /proc is close to
> mandatory these days. The error
> message could be nicer, but this is a
> libc bug.
>
>
> If I try inside the pbuilder chroot:
>
> 1|root@wr-linux01:/ #
> mount
>
>
>
>
>
>
>
>
>
>
>
> mount: failed to read mtab: No such file or directory
> 2|root@wr-linux01:/ #
> readelf -d /usr/bin/java | grep ORIGIN
> 0x000000000000000f (RPATH)
> Library rpath:
>
> [$ORIGIN/../lib/amd64/jli:/usr/local/jre/lib/amd64/jli:$ORIGIN/../lib/amd64:/usr/local/lib/amd64:$ORIGIN/../jre/lib/amd64:/usr/local/jre/lib/amd64]
>
>
> I can confirm that /proc is not mounted. Any idea how
> to approach this
> to finally build libsbml successfully (at least passing the
> step to
> Generate Java-API Documentation?
>
> Kind regards
>
> Andreas.
>
> --
> http://fam-tille.de
>
>
--
http://fam-tille.de
