I remember something ghc related
https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=787227 https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=773768 Cheers G. -------------------------------------------- Gio 17/12/15, Andreas Tille <andr...@fam-tille.de> ha scritto: Oggetto: Re: cmake issue in libsbml: Cannot generate java documentation, please specify the Java_JAVADOC_JAR. A: "Debian Mentors List" <debian-mentors@lists.debian.org> Cc: "Debian Med Packaging Team" <debian-med-packag...@lists.alioth.debian.org>, "Ivo Maintz" <i...@maintz.de> Data: Giovedì 17 dicembre 2015, 17:26 Hi Kevin, On Thu, Dec 17, 2015 at 10:44:40PM +1100, Kevin Murray wrote: > > I have pushed a possible fix to the branch 'daube/possible-cmake-fix'. I am not > sure of the overall effects, the build is taking ages on my laptop, but it seems > to have fixed the immediate error. Thanks a lot for this first and very helpful step. Following this strategy I was even able to work around another issue with Java bindings which was also solved by setting a variable accordingly. Finally after 1-2 hours of building I went into ... make[4]: Entering directory '/build/libsbml-5.12.0+dfsg/build' [100%] Generate Java-API Documentation /usr/bin/javac: error while loading shared libraries: libjli.so: cannot open shared object file: No such file or directory docs/CMakeFiles/api_docs_java.dir/build.make:61: recipe for target '../docs/formatted/java-api/index.html' failed make[4]: *** [../docs/formatted/java-api/index.html] Error 127 make[4]: Leaving directory '/build/libsbml-5.12.0+dfsg/build' CMakeFiles/Makefile2:1123: recipe for target 'docs/CMakeFiles/api_docs_java.dir/all' failed make[3]: *** [docs/CMakeFiles/api_docs_java.dir/all] Error 2 make[3]: Leaving directory '/build/libsbml-5.12.0+dfsg/build' ... When I trow the error message above in a web search it comes up with the log of bug #548729 which says: This is most likely a lack of /proc. Some ld.so features require /proc/self/exe. $ readelf -d /usr/bin/java | grep ORIGIN 0x000000000000000f (RPATH) Library rpath: [$ORIGIN/../lib/amd64/jli:$ORIGIN/../jre/lib/amd64/jli] 0x000000006ffffffb (FLAGS_1) Flags: ORIGIN AFAIK, a mounted /proc is close to mandatory these days. The error message could be nicer, but this is a libc bug. If I try inside the pbuilder chroot: 1|root@wr-linux01:/ # mount mount: failed to read mtab: No such file or directory 2|root@wr-linux01:/ # readelf -d /usr/bin/java | grep ORIGIN 0x000000000000000f (RPATH) Library rpath: [$ORIGIN/../lib/amd64/jli:/usr/local/jre/lib/amd64/jli:$ORIGIN/../lib/amd64:/usr/local/lib/amd64:$ORIGIN/../jre/lib/amd64:/usr/local/jre/lib/amd64] I can confirm that /proc is not mounted. Any idea how to approach this to finally build libsbml successfully (at least passing the step to Generate Java-API Documentation? Kind regards Andreas. -- http://fam-tille.de
