Hi, On Wed, Apr 29, 2020 at 10:30:35AM +0800, 黄佳文 wrote: > I am a developer from Loongson company (R & D CPU/mip64el), I've been > looking at this recently.
Very nice to see mips developers to care for biological software. :-) > I did two experiments, and I found that when I used Python 3,7 to compile > python-biopython, Build successfully. > In the same environment, I just upgrade Python 3.7 to Python 3.8, and then > compile python-biopytho, Build fails, but not bus error. > I found through online query that some symbol tables were added and deleted > in upgrading Python 3.7 to 3.8. The following are symbol tables: Sorry to insist here - I do not think that it is a Python version problem at all. The issue can be reproduced in clustalo only which is pure C code. May be you have a look at https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=956324#59 and the following discussion. Despite Matthew has found some issues inside the C code it did not helped to prevent: Starting program: /home/tille/clustalo/src/clustalo -i debian/tests/biopython_testdata/f002 --guidetree-out temp_test.dnd -o temp_test.aln --outfmt clustal --force [Thread debugging using libthread_db enabled] Using host libthread_db library "/lib/mipsel-linux-gnu/libthread_db.so.1". Program received signal SIGBUS, Bus error. 0x5556a1b8 in PairDistances (distmat=0x7fff278c, mseq=0x55692a30, pairdist_type=<optimized out>, bPercID=<optimized out>, istart=0, iend=3, jstart=0, jend=3, fdist_in=0x0, fdist_out=0x0) at pair_dist.c:346 346 NewProgress(&prProgress, LogGetFP(&rLog, LOG_INFO), That's the issue we need to care about here. Kind regards and thanks a lot for the attempt to help Andreas.
