Control: severity 1022307 normal Hi Andreas,
Andreas Tille, on 2022-11-25: > Am Thu, Nov 24, 2022 at 10:35:06PM +0100 schrieb Étienne Mollier: > > > > python-biopython 1.80 is uploaded to experimental and should > > build soon[1], if this is not the case already. I haven't had a > > lot of opportunities to extensively test interactions between > > muscle3 and 5; I guess the situation will be clearer when > > muscle3 makes it through NEW. It would be nice that people > > using biopython and muscle give this a try as early as possible. > > Thanks a lot for this. > > I've just reverted the version of t-coffee and have uploaded > t-coffee_13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 - not proud about > this name, but well, it should do the trick without an epoch. > > Hope this will settle the situation with biopython soonish. Thanks, this should reduce the noise on the t_coffee front. Since python-biopython 1.79 doesn't fail to build from source anymore, I reduce the severity already. I don't close just yet to avoid forgetting to bring back t-coffee in the build time test dependencies when migrating biopython 1.80 to unstable. There is also a FIXME item related to muscle3 support, that can be brought back once muscle3 passes through the NEW queue. Speaking of biopython 1.80, pseudo-excuses are looking good[1]. I fixed the autopkgtest regression in python-faidx yesterday. When trying to rebuild reverse dependencies, I also noted an issue in python-pauvre[2], which I forwarded upstream, since it didn't look easy to fix on first sight. Once sorted, I suppose it would be feasible to upgrade biopython 1.80 in unstable. [1]: https://qa.debian.org/excuses.php?experimental=1&package=python-biopython [2]: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1024835 Have a nice day, :) -- Étienne Mollier <emoll...@emlwks999.eu> Fingerprint: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da Sent from /dev/pts/3, please excuse my verbosity. On air: Chicago - Make Me Smile
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