Hi all, Andreas Tille, on 2022-11-24: > Am Thu, Nov 24, 2022 at 06:58:04PM +0100 schrieb Étienne Mollier: > > Thanks for the upload, I further adjusted the muscle wrapper so > > it would catch the muscle3 binary if it finds it in the path, as > > I see your new package provides the executable /usr/bin/muscle3. > > If no such executable is available, the default switches to > > plain muscle. In any case it is possible for a user of the > > biopython wrapper to enforce a given executable name by setting > > the cmd argument of the constructor. Changes are available in > > the muscle3 patch[2] on salsa. I'm hopeful to upload biopython > > 1.80 to experimental this evening. > > This sounds all very sensible. Thanks a lot
This is also all very experimental. ;) python-biopython 1.80 is uploaded to experimental and should build soon[1], if this is not the case already. I haven't had a lot of opportunities to extensively test interactions between muscle3 and 5; I guess the situation will be clearer when muscle3 makes it through NEW. It would be nice that people using biopython and muscle give this a try as early as possible. [1]: https://buildd.debian.org/status/package.php?p=python-biopython&suite=experimental Have a nice day, :) -- Étienne Mollier <emoll...@emlwks999.eu> Fingerprint: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da Sent from /dev/pts/2, please excuse my verbosity. On air: Martin Orford - Out in the Darkness
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