Hi Michael, I'd happily address this rightaway, but what do you suggest? A separate arch-indep package sounds appropriate to me.
On a sidenote - the Nanopore Structural Variant pipeline also needs vcfsort. Best, Steffen Am 23.05.21 um 15:47 schrieb Michael R. Crusoe: > Thanks for catching this, Steffen! > > A bug report would be appreciated, so we don't lose track of this. > > -- > Michael R. Crusoe > > On Sun, May 23, 2021, 14:51 Steffen Möller <steffen_moel...@gmx.de > <mailto:steffen_moel...@gmx.de>> wrote: > > Hello, > > cudaSV needs bgziptabix to be happy, which is how I became aware > fo all > the scripts in > > Med/libvcflib$ ls scripts/ > bed2region plotXPEHH.R vcfindelproximity > vcfnulldotslashdot vcfregionreduce_and_cut > bgziptabix vcf2bed.py vcfindels > vcfplotaltdiscrepancy.r vcfregionreduce_pipe > plotBfst.R vcf2sqlite.py vcfjoincalls > vcfplotaltdiscrepancy.sh vcfregionreduce_uncompressed > plotHaplotypes.R vcfbiallelic vcfmultiallelic > vcfplotsitediscrepancy.r vcfremovenonATGC > plotHapLrt.R vcfclearid vcfmultiway > vcfplottstv.sh vcfsnps > plotPfst.R vcfclearinfo vcfmultiwayscripts > vcfprintaltdiscrepancy.r vcfsort > plot_roc.r vcfcomplex vcfnobiallelicsnps > vcfprintaltdiscrepancy.sh vcf_strip_extra_headers > plotSmoothed.R vcffirstheader vcfnoindels > vcfqualfilter vcfvarstats > plotWCfst.R vcfgtcompare.sh vcfnosnps vcfregionreduce > Med/libvcflib$ du -sh scripts/ > 399K scripts/ > > being plain missing in libvcflib1 . Should there be a libvcflib-bin > package? These scripts are expected to install together with > vcflib, so > maybe having them recommended is a good idea? The vcftools package is > something independent. > > debian/rules removes *.R files, so someone on this list knows more > about > it all than me, please give some directions. > > Best, > Steffen >
